Pairwise Alignments

Query, 211 a.a., 30S ribosomal protein S3 from Methanococcus maripaludis S2

Subject, 229 a.a., 30S ribosomal protein S3 (RefSeq) from Shewanella loihica PV-4

 Score = 87.0 bits (214), Expect = 2e-22
 Identities = 54/176 (30%), Positives = 97/176 (55%), Gaps = 4/176 (2%)

Query: 12  SETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLATE 71
           S+  + ++ + KL +A  S I  ++     R+T+   +PG VIG+KG+ V++L   +A  
Sbjct: 35  SDWEVRKFLEKKLKQASVSKIVIERPAKSVRVTIHTARPGVVIGKKGEDVEKLRNEVAKL 94

Query: 72  YSVKNPQIEVKQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVAIIV 131
             +   QI + ++  P+LD  +V   IAS LER + FR+    A++  M  GAKG+ + V
Sbjct: 95  TGIP-AQINIAEIRKPELDAKLVAEGIASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEV 153

Query: 132 SGKLSG-ERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGIVGVTVKIMRPDV 186
           SG+L G E +R+E + +G +        A ++ S   +  + G++GV V + + +V
Sbjct: 154 SGRLGGAEIARSEWYREGRVPL--HTLRADIDYSTAESHTQYGVIGVKVWVFKGEV 207