Pairwise Alignments

Query, 1189 a.a., chromosome segregation protein SMC from Methanococcus maripaludis S2

Subject, 1162 a.a., condensin subunit Smc from Pseudomonas syringae pv. syringae B728a

 Score =  280 bits (715), Expect = 6e-79
 Identities = 286/1242 (23%), Positives = 564/1242 (45%), Gaps = 153/1242 (12%)

Query: 7    IHMKNFKSFKN-SKLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFNQLI 65
            I +  FKSF + + +  P    A++GPNG GKSN ID + +V+G++SAK+LR      +I
Sbjct: 6    IKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGESMTDVI 65

Query: 66   TYHNGKRE--NFAEVTLIFDNKDRKMPVDSD---KVGISRKVKINGDNNYYLIWNEEKEV 120
               +  R+  + A + L+FDN D  +  +     ++ I RKV  +  N+YYL        
Sbjct: 66   FNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQNSYYL-------- 117

Query: 121  KENGEIKTVKEEKRKKVKKSEILDVIGKISLSADGFNIILQGDLIKIIDTTPNERRKIID 180
              NG           K ++ +I D+     L    ++II QG + K+I+  P + R  I+
Sbjct: 118  --NGT----------KCRRRDITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIE 165

Query: 181  EISGVAEFDEKGEKAKKELEKAREFIEKIDIRINEVKNNLEKLKKEKEDAETHVKLTEEL 240
            E +G++++ E+  + +  + +  E + ++     E++  LE+L ++ + AE + +   E 
Sbjct: 166  EAAGISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEE 225

Query: 241  KATKYILTSKKIEFLNGILEKTKEEIEALKEMKVCFLKEISEYDAKSNDIRNRLQNLINE 300
            +  K  L++ + + LN ++ + +  I      +V F   +++  +    I  RL++  ++
Sbjct: 226  RQLKAQLSALRWQALNDLVGQREAVIS---NQEVGFEALVADQRSADASIE-RLRDGHHD 281

Query: 301  LNEKGN---EEIMELHKSIKEMEVTVDNDKKSLNGALDDLKNVNSQSEKKGQDLVETRQK 357
            L+E+ N        +   I  +E ++ + ++ L    DDL+    ++E+  Q+  E+   
Sbjct: 282  LSERFNLVQGRFYSVGGDIARVEQSIQHGQQRLRQLQDDLR----EAERARQE-TESHLG 336

Query: 358  IETIRTETLQKEAEINALKTEMENLETEKKKLKSKVEESETQTEILKQQERKLSERINES 417
             +T    TL +E E+   + EM +   E+  +   +E++E   +  +++    +++  E 
Sbjct: 337  HDTTLLATLGEELEMLEPEQEMTSAAAEESAIA--LEDAEAAMQGWQEKWDVFNQQSAEP 394

Query: 418  QNELYNFKNEFNALENEINKKSFNLAKNKETIETLQKELEE--IRSEHEDTKSLYKELED 475
            Q +    ++    LE  I + +    +  E  + L  + E+  I    ED  +    LE+
Sbjct: 395  QRQAQVQQSRIQQLEQSIERLAERQRRLAEERQLLAADPEDAAILQLSEDLATRDMTLEE 454

Query: 476  VAVELEYSKKKVVTLLENKKEYQDRLDKSHADYIKENAKIKAMKDMEDFSLDR---AVKS 532
            + +  E + +++  L E  +       ++  +  + N ++ +++ ++  +LD      + 
Sbjct: 455  LHMGEEQAVERLEQLREALQHASQAQQQAQGELQRLNGRLASLEALQQAALDPDTGTAEW 514

Query: 533  VLEAKLPGVVDIAGNLGKTDAEYKTAIENAGGNRLNYIVVKRMDDGARAIQYLKKNNLGR 592
            + + +L     +A  L   +A ++ A+E   G  L  ++V   D     +   ++ +L R
Sbjct: 515  LRDQQLAERPRLAEGLS-VEAGWELAVETVLGADLQAVLVDDFD--GLDLANFEQGDL-R 570

Query: 593  TTFLPLDRINGPEALYLDDEGVVGRAIDLVEFKPEHENLFRYVFGNTIIVENLDYA---- 648
                  D I  P +L       V   +DL  +            G  I VENLD A    
Sbjct: 571  LLSAGADTIRAPGSLLEK----VDSTVDLSAW-----------LGQVIPVENLDEALARR 615

Query: 649  -------KTLSKDHR---ARFVTLEGEVIEPSGAMIGGRSRKKSVIKVDIDTSKLEKLAE 698
                     +S+D       F+ +       SG +  G+  ++  ++ D   + L  L E
Sbjct: 616  AQLSAGQSLISRDGYWVGRHFLRVRRASEAQSGVLARGQELQRLSLERDEREATLATLEE 675

Query: 699  DISELDGTLSETKDEIERLQNKNATYSTRKMELESRLKIIKDLEHKKEGILTNNGVKIKE 758
             +  L    S+ +D  E+L+ +    + ++ EL+++L  ++              VK+++
Sbjct: 676  QLLVLREQQSQQEDAREQLRRRVQDETRQQSELKAQLSAVR--------------VKVEQ 721

Query: 759  LELESRKLEEEL-----------DYLEGSKEELERKIEEF---TKKISGFTSQRDRISEE 804
            L L   +L+EEL           ++L  S+ +L+  ++     T++     +QRD + E 
Sbjct: 722  LTLRRTRLDEELAELGEQRAVEHEHLGESRLQLQDALDSMAQDTEQREVLQAQRDALRER 781

Query: 805  IASF-----ENSEHSKRIKV--------IDENIIAFEKKKNEFEN--EIKRDAVLIKEVL 849
            +        ++ +HS ++ V         D    A E+ + + E   E +    L  E  
Sbjct: 782  LDRIRQDARQHKDHSHQLAVRLGSIKAQYDSTRQALERLRMQSERLTEKREQLSLNLEEG 841

Query: 850  IPKISELNSNIKELSEKRTILEQNIQFYKNNVEKNFEILKNKKERYEDLTKDLRELTEKK 909
               + EL   ++EL E+R +++  ++  KN +E              D  ++LRE  +++
Sbjct: 842  EAPLEELRLKLEELLERRMVVDDEMRIAKNALE--------------DADRELREAEKRR 887

Query: 910  EAFEKELEILNGEKRRVYGRINQNESQINSLSIDKAKYETRLEEEDRKLYVCENIEQISE 969
               E++ ++L G+       + Q   +  +L++ +   + +L E+   L+       +  
Sbjct: 888  TQAEQQSQLLRGQ-------LEQQRLEWQALTVRRKALQDQLHEDGYDLH------GVLA 934

Query: 970  DITSKIKEFDVDALESHQIDLEGHIKKLEPVNMRAIDDYQYIVDRYDELFEKRTDYENEE 1029
             +T +  E    A E     + G I++L  +N+ AID+YQ   +R   L  +  D     
Sbjct: 935  TLTPEASE---QAAEQQLESIAGRIQRLGAINLAAIDEYQQQSERKRYLDAQDADLVEAL 991

Query: 1030 KKYLHLIEEVSKRKKEVFMDVYLKVAENYEKIYTEIGGSGKLSLE-NPEDPFSGGLLIDA 1088
                ++I ++ K  +  F D + ++    + ++ ++ G G   LE   ED    G+ I A
Sbjct: 992  DTLENVIRKIDKETRNRFKDTFDQINSGIQALFPKVFGGGSAYLELTGEDLLDTGVTIMA 1051

Query: 1089 SPMNKKLQSLDVMSGGEKSLTALAFLFAIQHLNPAPFYVLDEVDAALDTKNAGLIGEMIK 1148
             P  KK  ++ ++SGGEK+LTALA +FAI  LNPAPF +LDEVDA LD  N G    ++K
Sbjct: 1052 RPPGKKNSTIHLLSGGEKALTALALVFAIFKLNPAPFCMLDEVDAPLDDANVGRYARLVK 1111

Query: 1149 NASKDSQFIVISHREQMISKSDVMYGVCM-ENGLSKLVGLKI 1189
              S+  QFI I+H +  +  +D + GV M E G S+LV + +
Sbjct: 1112 EMSQTVQFIYITHNKIAMEMADQLMGVTMHEPGCSRLVAVDV 1153