Pairwise Alignments

Query, 1189 a.a., chromosome segregation protein SMC from Methanococcus maripaludis S2

Subject, 1195 a.a., condensin subunit Smc from Synechococcus elongatus PCC 7942

 Score =  406 bits (1044), Expect = e-117
 Identities = 318/1243 (25%), Positives = 607/1243 (48%), Gaps = 128/1243 (10%)

Query: 4    LSEIHMKNFKSFKNS-KLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFN 62
            + +I + +FKSF  +  L +   FT + GPNGSGKSN +D + F LG +S+K +RA +  
Sbjct: 4    IKQIELSHFKSFGGTTSLPLLPEFTVVTGPNGSGKSNILDALLFALGLSSSKGMRADRLP 63

Query: 63   QLI--TYHNGKR---ENFAEVTLIFDNKDRKMPVDSDKVG-----------ISRKVKING 106
             L+  TY +  R   E    VT   D+   +     +  G           +SRK+++  
Sbjct: 64   DLVNSTYASRSRSTVETLVTVTFALDDWQPEAEETEEGEGTGLQPGMAEWTVSRKLRVTP 123

Query: 107  DNNYYLIWNEEKEVKENGEIKTVKEEKRKKVKKSEILDVIGKISLSADGFNIILQGDLIK 166
               Y   +        NGE  T+++          + + + ++ +  +G+N++LQGD+  
Sbjct: 124  SGTYTSTY------AMNGEACTLQQ----------LHEQLSRLRIYPEGYNVVLQGDVTN 167

Query: 167  IIDTTPNERRKIIDEISGVAEFDEKGEKAKKELEKAREFIEKIDIRINEVKNNLEKLKKE 226
            II  +P +RR+IIDE++GVA+FD K E+AK +LE  +E  ++  I   E+    ++L K+
Sbjct: 168  IISMSPRDRRQIIDELAGVAQFDRKIEQAKGKLEAVKEREDRCRIVEQELIEQRDRLAKD 227

Query: 227  KEDAETHVKLTEELKATK--------YILTSKKIEFLNGILEKTKEEIEALKEMKVCFLK 278
            +E A+ +  L +E +ATK        +    ++++ L   L +   +    ++ +    +
Sbjct: 228  REKAQKYQALRQE-QATKQSWEAVLRWRAGQRQVQALQRSLAQLATDAATDQQTQQTLEQ 286

Query: 279  EISEYDAKSNDIRNRLQNLINELNEKGNEEIMELHKSIKEMEVTVDNDKKSLNGALDDLK 338
            +I + +A  + +  R++ L       G EE+++L  ++ + E     +++       +L 
Sbjct: 287  QIQQTEATLDRLNQRVKAL-------GEEELLKLQAALAQQEA----EQRQSQRQQQELV 335

Query: 339  NVNSQSEKKGQDLVETRQKIETIRTETLQKEAEINALKTEMENLETEKKKLKSKVEESET 398
               +Q++++ Q L++T+ +++T   E  Q+  +   L+T      T  + L+ + +++  
Sbjct: 336  ESQTQTQQQIQALLQTQAQLQT---EGQQQAEQARTLQT------TIAQTLQPQYQQALE 386

Query: 399  QTEILKQQERKLSERINESQNELYNFKNEFNALENEINKKSFNLAKNKETIETLQKELE- 457
            Q E  +Q    L+ +  +      + + + +A+  ++  +    A+ +E    LQ++LE 
Sbjct: 387  QVEAARQSAHALAAQSQDWVTRQTSLRQQADAIAAQVEPQRAEQAQLQERQTQLQQQLEA 446

Query: 458  ----------EIRSEHEDTKSLYKELEDVAVELEYSKKKVVTL---LENKKEYQDRLDKS 504
                      E+ +E E  +     L      +  +  ++V L   L+ ++E +DRL K 
Sbjct: 447  TQSALVTVTAELETETEQAEGDRAALSQAEAAVVTAADQLVRLEEELQIQQETRDRLLKE 506

Query: 505  HADYIKENAKIKAMKD-MEDFSLDRAVKSVLEAKLPGVVDIAGNLGKTDAEYKTAIENAG 563
              D  ++  + ++++  M++     A + +L+  LPGV  +   LG+ +  Y+ A+E A 
Sbjct: 507  QRDKQRQLDRQESLRQAMQETQGTAAARLILDTGLPGVHGLVAQLGRVEPRYQLALEVAA 566

Query: 564  GNRLNYIVVKRMDDGARA--IQYLKKNNLGRTTFLPLDRING---PEA-LYLDDEGVVGR 617
            G RL Y+VV   DDG  +  I+ LK+   GR TFLPL+RI     PE   +   EG+V  
Sbjct: 567  GGRLGYLVVD--DDGVASAGIELLKQKKAGRITFLPLNRIRAGKQPEIPRWQQPEGLVDL 624

Query: 618  AIDLVEFKPEHENLFRYVFGNTIIVENLDYAKTLSKDHRARFVTLEGEVIEPSGAMIGGR 677
            AI LV+    +  +F++V G T++ E LD A+     +R   VTL+GE++E SGAM GG 
Sbjct: 625  AIALVDCDDRYREVFKFVLGGTVVFERLDQARRYMGQYR--IVTLDGELLETSGAMTGGS 682

Query: 678  SRKKSVIKVDIDTSKLEKLAEDISELDGTLSETKDEIERLQNKNATYSTRKMELESRLKI 737
              ++S          L   + D     G  +E +   +RL+         ++++ +    
Sbjct: 683  IARRS--------GGLSFGSPD----SGESAEVRAIRDRLEQLEVILDRSELQILNLQAA 730

Query: 738  IKDLEHKKEGILTNNGVKIKELELESRKLEEELDYLEGSKEELERKIEEFTKKISGFTSQ 797
            IKD        L++   + +E +L  ++ ++ L  L+  +++L  ++++  ++ S   ++
Sbjct: 731  IKDAA----STLSDRRQQQREQQLTVQQRQQTLQRLQQQQQQLNAELQQRQQQASQAQAR 786

Query: 798  RDRISEEIASFENSEHSKRIKVIDENIIAFEKKKNEFENEIKRDAVLIKEVLIPK----- 852
               ++ E+ +       K++K + + +   E      E + ++  +  +E L+ +     
Sbjct: 787  LAALALELPAA-----LKQLKTLRQALAELEDSPIHGEWQQRQTLLQQQEALLQQQETAL 841

Query: 853  ------ISELNSNIKELSEKRTILEQNIQFYKNNVEKNFEILKNKKERYEDLTKDLRELT 906
                  + +L ++ K L E+    +  +   +    +    L    E+       + +L 
Sbjct: 842  RQAEQQLQQLQTDQKRLQERAIAAQTQVSQLRQQQGEQLNRLAQLDEQQRQQATAIAQLQ 901

Query: 907  EKKEAFEKELEILNGEKRRVYGRINQNESQINSLSIDKAKYETRLEEEDRKLYVCE---- 962
            +++   E +L     ++ R   ++ +  SQ  +L   + K + + +E  ++L   E    
Sbjct: 902  QRQAQLEAQLGQEKVDRDRTERQLQEQRSQRQNLVWQQEKRQQQQQELQQQLTDLEVQLQ 961

Query: 963  ----NIEQISEDITSKIKEFDVDALESHQIDLEGHIKKLEPVNMRAIDDYQYIVDRYDEL 1018
                 + Q   DI   +++  ++AL+     L   I+ +EPVNM A+++Y+    R +EL
Sbjct: 962  AEQQELPQPLPDIPEMVQQQGIEALQHELRSLAKRIQAMEPVNMLALEEYERTQARLEEL 1021

Query: 1019 FEKRTDYENEEKKYLHLIEEVSKRKKEVFMDVYLKVAENYEKIYTEIG-GSGKLSLENPE 1077
             EK T  E E  + L  IE  +  ++  FM+ +  +  N+++I+  +  G G L L+NPE
Sbjct: 1022 SEKLTTIEAERTELLLRIENFTTLRRRAFMESFEAIDRNFQEIFAHLSDGDGSLQLDNPE 1081

Query: 1078 DPFSGGLLIDASPMNKKLQSLDVMSGGEKSLTALAFLFAIQHLNPAPFYVLDEVDAALDT 1137
            DPFS GL + A P  K ++ L  MSGGEKSLTAL+F+FA+Q   P+PFY LDEVD+ LD 
Sbjct: 1082 DPFSSGLNLIAHPKGKPVRRLASMSGGEKSLTALSFIFALQRYRPSPFYALDEVDSFLDG 1141

Query: 1138 KNAGLIGEMIKNASKDSQFIVISHREQMISKSDVMYGVCMENG 1180
             N   +  +I+  ++ +QFIV+SHR  MI  ++   GV    G
Sbjct: 1142 ANVERLARVIRQQAQAAQFIVVSHRRPMIEAAERTIGVTQARG 1184