Pairwise Alignments

Query, 1189 a.a., chromosome segregation protein SMC from Methanococcus maripaludis S2

Subject, 1139 a.a., SMC family protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  214 bits (544), Expect = 4e-59
 Identities = 261/1241 (21%), Positives = 531/1241 (42%), Gaps = 169/1241 (13%)

Query: 4    LSEIHMKNFKSFKN-SKLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFN 62
            L +I +  FKSF + +++  P+  TAI+GPNG GKSN ID + +VLG++SAK LR     
Sbjct: 3    LKQIKLAGFKSFVDPTRIPFPNPLTAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDSMT 62

Query: 63   QLITYHNGKRE--NFAEVTLIFDNKDRKMP---VDSDKVGISRKVKINGDNNYYLIWNEE 117
             +I   +  R   + A V L+FDN++ ++       +++ + R+V  +G++ Y+L     
Sbjct: 63   DVIFNGSSARRPVSVAGVELVFDNREGRLGGQYASYEEIAVKRQVSRDGESLYFL----- 117

Query: 118  KEVKENGEIKTVKEEKRKKVKKSEILDVIGKISLSADGFNIILQGDLIKIIDTTPNERRK 177
                 NG+          K ++ +I D+     L    + II QG + ++I++ P E R 
Sbjct: 118  -----NGQ----------KCRRKDITDLFMGTGLGPRSYAIIEQGMISRLIESRPQELRV 162

Query: 178  IIDEISGVAEFDEKGEKAKKELEKAREFIEKI-DIRINEVKNNLEKLKKEKEDAETHVKL 236
             I+E +G++ + E+    +  +   RE +E++ DIR+ E+   L+KL  + E A+ +   
Sbjct: 163  FIEEAAGISRYKERRRDTENRIRHTRENLERLGDIRL-ELGKQLDKLAVQAEAAKRY--- 218

Query: 237  TEELKATKYILTSKKIEFLNGILEKTKEEIEALKEMKVCFLKEISEYDAKSNDIRNRLQN 296
              E K  +                 T  E+  ++  ++C                     
Sbjct: 219  -REYKQAE---------------RTTHAELLVMRYQEIC--------------------- 241

Query: 297  LINELNEKGNEEIMELHKSIKEMEVTVDNDKKSLN---GALDDLKNVNSQSEKKGQDLVE 353
                      ++   L + I + +    + K SL+     LD+ K V +    + QD +E
Sbjct: 242  ----------QQADALGREITQQDFLYQSAKTSLDTTAARLDEQKLVLAALVDEEQDTLE 291

Query: 354  TRQKIETIRTETLQKEAEINALKTEMENLETEKKKLKSKVEESETQTEILKQQERKLSER 413
                  T          E+  L+ ++ +LE     L+S+ +    +   L  ++  L   
Sbjct: 292  AYYLAGT----------EVARLEQQLSHLEERSHSLRSRGDSLAEEISGLMARQASLEAA 341

Query: 414  INESQNELYNFKNEFNALENEINKKSFNLAKNKETIETLQKELEEIRSEHEDTKSLYKEL 473
              E+ ++L   ++    LE   +  S +  + +E +E L+  + +    H +TK+  +  
Sbjct: 342  QQEAADKLAGQEDALLGLEETQDAWSQSAEEAEEVLEQLKDAVTQAERRHGETKARCELT 401

Query: 474  EDVAVELEYSKKKVVTLLENKKEYQDRLDKSHADYIKENAKIKAMKDMEDFSLDRAVKSV 533
                V L+   ++    L   +E Q        D +   ++   +     F   +A +S 
Sbjct: 402  SQRLVHLKQVSQEKAQSLSGYREQQASQGDEDVDPVTPPSEQILVPLTVRFDNAKAAESQ 461

Query: 534  LEAKL----PGVVDIAGNLGKTDAEYKT--------AIENAGGNRLNYIVVKRMDDGAR- 580
            ++A L      +    G   +    Y          A+ +AG  R    + +R+D  A  
Sbjct: 462  VKAALVECEQALAKCRGEQSEAQGRYSVLSRLLDDNAVNDAGSARTK--LWQRLDVAAGW 519

Query: 581  ------AIQYLKKNNLGRTTFLPLDRINGPEALYLD--DEGVVGRAIDLVEFKPEHENLF 632
                   + +L +  L   T    D  +G    Y +  D G++    +L  +        
Sbjct: 520  EKTAELLLGHLLEQPLFEDTAFGEDAFDGRGFRYQEKGDWGIMQAPANLAPW-------- 571

Query: 633  RYVFGNTIIVENLDYAKTLSKDHRARFVTLEGEVIEPS-GAMIG--------GRSRKKSV 683
                     ++ + +A++L++       T +  +I    G ++G        G    K  
Sbjct: 572  ---------LDTVGFAESLNEAQERLVGTAQSTLIATKDGYLVGHGLVLQQQGTGTDKVA 622

Query: 684  IKVDIDT--SKLEKLAEDISELDGTLSETKD-----EIERLQNKNATYSTRKMELESRLK 736
            +K + +   +++ ++  ++++ +  +++ +D      I R   +   +  ++ +   +  
Sbjct: 623  LKAEAEALGARIGQIQAELAQYERAVAQQRDALNLARIHREAVEAELFEAKQQQARQQTL 682

Query: 737  IIKDLEHKKEGILTNNGVKIKELELESRKLEEELDYLEGSKEELERKIEEFTKKISGFTS 796
                + H+ +       +  ++++  +++ E+ L  LE + E L ++ E   +       
Sbjct: 683  WEASVAHQAQRAKQRAFID-EQIQRLTQQHEQSLLELEVADEALVQQEEALEQAAEALAQ 741

Query: 797  QRDRISEEIASFENSEHSKRIKVIDENIIAFEKKKNEFENEIKRDAVLIKEVLIPKISEL 856
             R+++       E  E    +  ID+++ A +  + E    +     LI + +     +L
Sbjct: 742  VREQLIPARRMAE--ERRASVANIDKSVEAAKATRAELATSL----ALINQQMASGKEQL 795

Query: 857  NSNIKELSEKRTI-LEQNIQF-YKNNVEKNFEILKNKKERYEDLTKD--LRELTEKKEAF 912
            +   K L++K T+  E   Q  +  + ++    +K +++     T+   L E   ++   
Sbjct: 796  S---KLLTQKATLDAELKAQSEHSGDADREALSMKLREQLATQQTRQTALAENRSRQAQV 852

Query: 913  EKELEILNGEKRRVYGRINQNESQINSLSIDKAKYETRLEEEDRKL-YVCENIEQISEDI 971
            +++++ L  ++++  G+I+     + SL   K + E    + D +L  + E   +++E +
Sbjct: 853  QEQIDALLLKQKQEVGKIDHLTHTLESL---KLRREGLKGQGDTQLGQLAEANIRLNEVL 909

Query: 972  TSKIKEFDVDALESHQIDLEGHIKKLEPVNMRAIDDYQYIVDRYDELFEKRTDYENEEKK 1031
             S      V+  +     L   I +L  +N+ AI++Y     R D L E+  D E   + 
Sbjct: 910  PSVPPHASVEEWQQRLEKLRSKISRLGAINLAAIEEYDEAKARKDYLDEQDRDLEQALES 969

Query: 1032 YLHLIEEVSKRKKEVFMDVYLKVAENYEKIYTEI--GGSGKLSLENPEDPFSGGLLIDAS 1089
                I ++ +  +  F   + +V  +   ++ ++  GGS  L+L +  D    G+ I A 
Sbjct: 970  LEEAIRKIDRETRSRFKATFEQVNADLGTLFPKVFGGGSAYLALTD-NDLLETGVTIMAR 1028

Query: 1090 PMNKKLQSLDVMSGGEKSLTALAFLFAIQHLNPAPFYVLDEVDAALDTKNAGLIGEMIKN 1149
            P  KK  ++ ++SGGEK+LTAL+ +FAI  LNPAPF +LDEVDA LD  N      +++ 
Sbjct: 1029 PPGKKNSTIHLLSGGEKALTALSLVFAIFRLNPAPFCMLDEVDAPLDDANVDRFCRLLQE 1088

Query: 1150 ASKDSQFIVISHREQMISKSDVMYGVCM-ENGLSKLVGLKI 1189
             S   QFI ISH +  +  +D + GV M E G+S++V + I
Sbjct: 1089 MSASVQFIYISHNKITMEMADQLVGVTMHEPGVSRIVAVDI 1129