Pairwise Alignments

Query, 1189 a.a., chromosome segregation protein SMC from Methanococcus maripaludis S2

Subject, 1145 a.a., SMC family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  249 bits (637), Expect = 7e-70
 Identities = 273/1228 (22%), Positives = 556/1228 (45%), Gaps = 136/1228 (11%)

Query: 4    LSEIHMKNFKSFKN-SKLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFN 62
            L +I +  FKSF + +K+      +AI+GPNG GKSN ID + +VLG++SAK LR    +
Sbjct: 3    LKQIKLAGFKSFVDPTKIPFLQALSAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDSMS 62

Query: 63   QLITYHNGKRE--NFAEVTLIFDNKDRKMP---VDSDKVGISRKVKINGDNNYYLIWNEE 117
             +I   +  R+  + A V L+F+NK+ ++       +++ + R+V  +G++ Y+L     
Sbjct: 63   DVIFNGSSARKPVSVAGVELVFENKEGRLAGQYASYEEISVKRQVSRDGESWYFL----- 117

Query: 118  KEVKENGEIKTVKEEKRKKVKKSEILDVIGKISLSADGFNIILQGDLIKIIDTTPNERRK 177
                 NG+          K ++ +I D+     L    + II QG + ++I++ P + R 
Sbjct: 118  -----NGQ----------KCRRKDITDLFMGTGLGPRSYAIIEQGTISRLIESKPQDLRT 162

Query: 178  IIDEISGVAEFDEKGEKAKKELEKAREFIEKI-DIRINEVKNNLEKLKKEKEDAETHVKL 236
             I+E +G++ + E+  + +  +   RE +E++ DIR +E+   L+KL ++ + A  + +L
Sbjct: 163  FIEEAAGISRYKERRRETESRIRHTRENLERLGDIR-SELGKQLDKLSQQAKAATQYREL 221

Query: 237  TEELKATKYILTSKKIEFLNGILEKTKEEIEALKEMKVCFLKEISEYDAKSNDIRNRLQN 296
             +  + T   L   + + L   +    E+I +L+  +          + +S +++ +L  
Sbjct: 222  KQAERKTHAELLVMRFQELQSQMASLSEQINSLELQQAAAQSLAQTSELESTELQVKLSQ 281

Query: 297  LINELNEKGNEEIMELHKSIKEMEVTVDNDKKSLNGALDDLKNVNSQSEKKGQDLVETRQ 356
            L  E  +   E        I ++E  + + K+           +++Q E+  + L + + 
Sbjct: 282  LA-EQEQHAVEAYYLTGTEIAKLEQQLQSQKQR-------DAQLHTQLEQLSEQLTQNKA 333

Query: 357  KIETIRTETLQKEAEINAL----KTEMENLETEKKKLKSKVEESETQTEILKQQERKLSE 412
            K++T +      EAE+  L    + + E ++  + + +  V  SE QTE+ + Q   +++
Sbjct: 334  KLDTYQASFHALEAELGQLAPQHELQQEMMDELQAQWEMSVSRSEAQTEVARTQASAVAQ 393

Query: 413  RINESQNELYNFK----NEFNALENEINKKSFNLAKNKETIETLQKELEEIRSEH--EDT 466
              ++ Q EL+  K     + NA + +++++              Q+EL  + +EH  EDT
Sbjct: 394  --HKLQLELHRSKLVHQQQLNAHKTQLHQEQ-------------QQELSSL-TEHALEDT 437

Query: 467  K-SLYKELE----DVAVELEYSKKKVVTLLENKKEYQDRLDKSHADYIKENAKIKAMKDM 521
              SL +E+E     +  ++E +++  + L+EN +     LD +  ++ + + ++ +M+  
Sbjct: 438  SASLSQEIELLEQVITQQIEVNQELELALVENTQ----ALDLARGEFEQLSQRLTSMRAR 493

Query: 522  EDFSLDRAVKSVLEAKLPGVVDIAGNLGKTDAEYKTAIE-------NAGGNRLNYIVVKR 574
             +       K    +  P +          +A  + A++           N L +     
Sbjct: 494  FELVEQWLAKQEELSDKPQLWQSIQVENGWEAAAELALQGLMTLPVGVSANELGFYT--- 550

Query: 575  MDDGARAIQYLKKNNLGRTTFLPLDRINGPEALYLDDEGVVGRAIDLVEFKPEHENLFR- 633
                AR ++ +  +  G    LP D    P    L     +  A   +      E +   
Sbjct: 551  ---DARCLEKIDDHIEGSPIKLPADVNLAPWLNGLKWADNLASAQAQLASLAADERIVTA 607

Query: 634  --YVFGNTIIVENLDYAKTLSKDHRARFVTLEGEVIEPSGAMIGGRSRKKSVIKVDIDTS 691
              Y+ G   ++   D +++L        V L  E  + S A+       + V    I  S
Sbjct: 608  DGYLLGKGFLIAKQDNSQSL--------VQLSKEQTQLSEAI------AECVQARAIQQS 653

Query: 692  KLEKLAEDISELDGTLSETKDEIERLQNKNATYSTRKMELESRLKIIKDLEHKKEGILTN 751
            KL++L++ + ++  ++++    + +LQ   AT ST+    E+  K  +    + E  +  
Sbjct: 654  KLDELSQQLIQVRDSVNQGTQRLHQLQLDKATKSTQLNNAEALAKQREAKRGQLEDTVAR 713

Query: 752  NGVKIKELELESRKLEEELDYLEGSKEELERKIEEFTKKISGFTSQRDRISEEIASFENS 811
               ++ EL  +   L E+ D L  +  +   K ++ ++   G  ++   +  +I     S
Sbjct: 714  THAELAELAGQLMLLAEQEDELADALAQSIDKQQQQSQDAQGDLARHQALKAQI-----S 768

Query: 812  EHSKRIKVIDENIIAFEKKKNEFENEIKRDAVLIKEVLIPK--ISELNSNIKEL--SEKR 867
            +  +R+  ++ ++ +   +      +I+   V + E++  +  +S   +++ EL   ++ 
Sbjct: 769  DTQRRLSTLNASLQSVTTRMAVSTEQIELQRVRVNELVQSRETLSAQLASVAELHGDQQT 828

Query: 868  TILEQNIQFYKNNVEKNFEILKNKKERYEDLTKDLRE--LTEKKEAFEKE--LEILNGEK 923
              L + +    N  +   + LK  + +   LT+ L    L +K+E  + E   + L+  K
Sbjct: 829  AKLSEQLALLLNQQQSQQQALKALRTQQSSLTETLNSIGLKQKQELGKLEGLTQSLSTLK 888

Query: 924  RRVYGRINQNESQINSLSIDKAKYETRLEEEDRKLYVCENIEQISEDITSKIKEFDVDAL 983
             R  G   Q +SQ+ +LS             ++++ + + I+ +  D      + D+D +
Sbjct: 889  LRREGLKGQADSQLAALS-------------EQQIVLAQIIDSLPSDGQPDKWQRDLDQI 935

Query: 984  ESHQIDLEGHIKKLEPVNMRAIDDYQYIVDRYDELFEKRTDYENEEKKYLHLIEEVSKRK 1043
                      I +L  +N+ AI++++   +R   L  +  D           I ++ K  
Sbjct: 936  RQ-------KIIRLGAINLAAIEEFEQQSERKSYLDHQDEDLNKGLATLEEAIRKIDKET 988

Query: 1044 KEVFMDVYLKVAENYEKIYTEIGGSGKLSLENPEDP-FSGGLLIDASPMNKKLQSLDVMS 1102
            +  F   +  V E+  +++ ++ G G+  L   ED     G+ I A P  KK  ++ ++S
Sbjct: 989  RTRFKATFDAVNEDLGRLFPKVFGGGRAYLALTEDDLLETGVTIMAQPPGKKNSTIHLLS 1048

Query: 1103 GGEKSLTALAFLFAIQHLNPAPFYVLDEVDAALDTKNAGLIGEMIKNASKDSQFIVISHR 1162
            GGEK+LTAL+ +FAI  LNPAPF +LDEVDA LD  N      ++K  S+  QFI ISH 
Sbjct: 1049 GGEKALTALSLVFAIFRLNPAPFCMLDEVDAPLDDANVERFCRLLKEMSQSVQFIYISHN 1108

Query: 1163 EQMISKSDVMYGVCM-ENGLSKLVGLKI 1189
            +  +  +D + GV M E G+S++V + +
Sbjct: 1109 KITMEMADQLIGVTMHEPGVSRIVAVDL 1136