Pairwise Alignments

Query, 1189 a.a., chromosome segregation protein SMC from Methanococcus maripaludis S2

Subject, 1142 a.a., chromosome segregation protein SMC (RefSeq) from Shewanella sp. ANA-3

 Score =  222 bits (566), Expect = 1e-61
 Identities = 279/1257 (22%), Positives = 543/1257 (43%), Gaps = 197/1257 (15%)

Query: 4    LSEIHMKNFKSFKN-SKLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFN 62
            L +I +  FKSF + +K+      +AI+GPNG GKSN ID + +VLG++SAK LR    +
Sbjct: 3    LKQIKLAGFKSFVDPTKIPFLQALSAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDSMS 62

Query: 63   QLITYHNGKRE--NFAEVTLIFDNKDRKMP---VDSDKVGISRKVKINGDNNYYLIWNEE 117
             +I   +  R+  + A V L+F+NK+ ++       +++ + R+V  +G++ Y+L     
Sbjct: 63   DVIFNGSSARKPVSVAGVELVFENKEGRLAGQYASYEEISVKRQVSRDGESWYFL----- 117

Query: 118  KEVKENGEIKTVKEEKRKKVKKSEILDVIGKISLSADGFNIILQGDLIKIIDTTPNERRK 177
                 NG+          K ++ +I D+     L    + II QG + ++I++ P + R 
Sbjct: 118  -----NGQ----------KCRRKDITDLFMGTGLGPRSYAIIEQGTISRLIESKPQDLRT 162

Query: 178  IIDEISGVAEFDEKGEKAKKELEKAREFIEKIDIRINEVKNNLEKLKKEKEDAETHVKLT 237
             I+E +G++ + E+    ++E E           RI   + NLE+L       +   +L 
Sbjct: 163  FIEEAAGISRYKER----RRETEN----------RIRHTRENLERL------GDIRSELA 202

Query: 238  EELKATKYILTSKKIEFLNGILEKTKEEIEALKEMKVCFLKEISEYDAKSNDIRNRLQNL 297
            ++L                   EK  ++ +A K+ +          + K  + +   + L
Sbjct: 203  KQL-------------------EKLSQQAKAAKQYR----------ELKQAERKTHAELL 233

Query: 298  INELNEKGNEEIMELHKSIKEMEVTVDNDKKSLNGALDDLKNVNSQSEKKGQDLVETRQK 357
            +    E    ++  L + I  +E+                       +   Q L +T + 
Sbjct: 234  VMRYQEL-QSQMASLSEQISSLEL----------------------QQAAAQSLAQTGEL 270

Query: 358  IETIRTETLQKEAEINALKTEMENLE-TEKKKLKSKVEESETQTEILKQQERKLSERINE 416
              T     L + AE      E   L  TE  KL+ +++  + +   L  Q  +LSE+I +
Sbjct: 271  ESTELQLKLSQLAEQEQQAVEAYYLTGTEIAKLEQQLQSQKQRDAQLHNQLEQLSEQIIQ 330

Query: 417  SQNELYNFKNEFNALENEINKKSFNLAKNKETIETLQKELE----EIRSEHEDTKSLYKE 472
            +Q +L  ++  F ALE E+++ +      +E ++ LQ + E       ++ E  + L   
Sbjct: 331  NQAKLAAYQASFQALEAELSQLAPQHELQQEMMDELQAQWEMSVSRSEAQSESARVLAAA 390

Query: 473  LEDVAVELEYSKKKVV---TLLENK----KEYQDRLDKSHADYIKENAKIKAMKDMEDFS 525
            +    ++LE  + K+     L  +K    +E Q  L   +A  +++N+   A  + E   
Sbjct: 391  VAQHKLQLELHRSKLAHQQQLNAHKTQLHQEQQQELASLNAHALEDNS---ASLNDEITQ 447

Query: 526  LDRAVKSVLEAKL---PGVVDIAGNLGKTDAEYKTAIENAGGNRLNYIVVKR-------M 575
            L++A+   +E        +  +   L     E++   +     R  + +V++       +
Sbjct: 448  LEQALAEQVEINQGFESTLAAVTHTLDVARGEFEQLSQRLTSMRARFELVEQWLAKQEEL 507

Query: 576  DDGARAIQYLKKNN---------LGRTTFLPLDRINGPEALYLDDEGVVGRAIDLVEFKP 626
             D  +  Q ++  N         L     LP+         Y D        +D      
Sbjct: 508  SDKPQLWQSIQVENGWEAAAELALQGLMTLPVGVNANEIGFYADAALSADVHLDGSPILD 567

Query: 627  EHENLFRYVFGNTIIVENLDYAK----TLSKDHRARFVTLEGEVIEPSGAMIGGRSRKKS 682
               NL  ++ G     +NL  A+    +L+ D R   VT +G ++   G +I  +   +S
Sbjct: 568  AKLNLAPWLKGLKW-ADNLASAQAQLPSLAADER--IVTADGYLLG-KGFLIAKQDNSQS 623

Query: 683  VIKVD------------------IDTSKLEKLAEDISELDGTLSETKDEIERLQNKNATY 724
            ++++                   I  +KL++LA+ ++++  +LS+    + +LQ   AT 
Sbjct: 624  LVQLSKEQTQLSEAIAECEQAKAIQQAKLDELAQQLTQVRDSLSQGTKRLHQLQLDKATK 683

Query: 725  STRKMELESRLKIIKDLEHKKEGILTNNGVKIKELELESRKLEEELDYLEGSKEELERKI 784
            ST+    E++ K        K G L      +   + E  +L E+L  L   ++EL   +
Sbjct: 684  STQLNNAEAQAK----QREAKRGQLAET---VARTQAELAELAEQLMLLAEQEDELAEAL 736

Query: 785  EEFTKKISGFT--SQRDRISEEIASFENSEHSKRIKVIDENIIAFEKKKNEFENEIKRDA 842
            E   ++    +  +Q D    +    +  +  +R+  ++ ++ +   +      +I+   
Sbjct: 737  EVSLEQQQQQSQDAQGDMARHQALKAQIGDAERRLASLNASLQSVTTRMAVSTEQIELQR 796

Query: 843  VLIKEVLIPK--ISELNSNI--KELSEKRTILEQNIQFYKNNVEKNFEILKNKKERYEDL 898
            V + E++  K  +S   +N+  +E  ++   L + +    N  +   + LK+ + +   L
Sbjct: 797  VRVSELVHSKETLSAQLANVAAQEGDQQTVQLSEQLAQLLNQQQGQQQALKSLRSQQSSL 856

Query: 899  TKDLRE--LTEKKEAFEKE--LEILNGEKRRVYGRINQNESQINSLSIDKAKYETRLEEE 954
            T+ L    L +K+E  + E   + L+  K R  G   Q +SQ+ +LS             
Sbjct: 857  TETLNSIGLKQKQELGKLEGLTQSLSTLKLRREGLKGQADSQLAALS------------- 903

Query: 955  DRKLYVCENIEQISEDITSKIKEFDVDALESHQIDLEGHIKKLEPVNMRAIDDYQYIVDR 1014
            ++++ + + ++ +  D      + D+D +    I       +L  +N+ AI++++   +R
Sbjct: 904  EQQIVLAQIVDSLPADGHPDKWQRDLDQIRQKII-------RLGAINLAAIEEFEQQSER 956

Query: 1015 YDELFEKRTDYENEEKKYLHLIEEVSKRKKEVFMDVYLKVAENYEKIYTEIGGSGKLSLE 1074
               L  +  D  N        I ++ K  +  F   +  V E+  +++ ++ G G+  L 
Sbjct: 957  KSYLDHQDEDLNNGLATLEEAIRKIDKETRTRFKTTFDAVNEDLGRLFPKVFGGGRAYLA 1016

Query: 1075 NPEDPF-SGGLLIDASPMNKKLQSLDVMSGGEKSLTALAFLFAIQHLNPAPFYVLDEVDA 1133
              ED     G+ I A P  KK  ++ ++SGGEK+LTAL+ +FAI  LNPAPF +LDEVDA
Sbjct: 1017 LTEDDLLETGVTIMAQPPGKKNSTIHLLSGGEKALTALSLVFAIFRLNPAPFCMLDEVDA 1076

Query: 1134 ALDTKNAGLIGEMIKNASKDSQFIVISHREQMISKSDVMYGVCM-ENGLSKLVGLKI 1189
             LD  N      ++K  S+  QFI ISH +  +  +D + GV M E G+S++V + +
Sbjct: 1077 PLDDANVERFCRLLKEMSQSVQFIYISHNKITMEMADQLIGVTMHEPGVSRIVAVDL 1133