Pairwise Alignments

Query, 752 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 461 a.a., ATP-dependent 23S rRNA helicase DbpA from Pseudomonas fluorescens FW300-N2E2

 Score = 44.7 bits (104), Expect = 1e-08
 Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 15/159 (9%)

Query: 309 AKEITNDPRFIQAVKNLNELDIEHPKYE-----KMLEIVKEILK-ENEKIVIFAQYRDTV 362
           + +   +P+ ++A    ++  IE   YE     +M  +VK +        V F   +  V
Sbjct: 198 SSKFMRNPQQVKAEAFHSDAQIEQRFYEIAPEERMDAVVKVLAHFRPASCVAFCFTKQQV 257

Query: 363 QKIVDLLSENEIEAIMFVGQSNKDGKGMSQKEQAKAIEKFKNEA-NVLVSTSVSEEGIDI 421
           Q+ VD L+   I A+   G        + Q+++ + +  F N + +VLV+T V+  G+DI
Sbjct: 258 QETVDHLTSKGISAVGLHGD-------LEQRDRDQVLAMFANRSTSVLVATDVAARGLDI 310

Query: 422 SSVNYVLFYEPVPSEIRMIQRRGRAAR-GEGGQVIVLIA 459
            +++ V+  E        I R GR  R GE G  I L+A
Sbjct: 311 DALDMVINVELARDSEIHIHRVGRTGRAGEKGIAISLVA 349