Pairwise Alignments

Query, 752 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 448 a.a., ATP-dependent RNA helicase SrmB from Pseudomonas fluorescens FW300-N2E2

 Score = 53.1 bits (126), Expect = 3e-11
 Identities = 67/321 (20%), Positives = 135/321 (42%), Gaps = 36/321 (11%)

Query: 243 SITVNKSELLGLNKKIMAMDDNIKYEMLRISSEAVKLEHAIEMLETQGKSTFLNYYQKLL 302
           ++ + + E+L L++    +D     ++ R+  E V  +  +    T G S       K+L
Sbjct: 140 NLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECVNRQQTMLFSATTGGSGLREMIAKVL 199

Query: 303 TQNTKSAKEITNDPRFIQ--AVKNLNE------LDIEHPKYEKMLEIVKEILKEN--EKI 352
                      N+P  +Q  AV  LN       +  +H ++++  +IV  +L     EK 
Sbjct: 200 -----------NNPEHLQLNAVSQLNSTTRQQIITADHNQHKE--QIVNWLLANETYEKA 246

Query: 353 VIFAQYRDTVQKIVDLLSENEIEAIMFVGQSNKDGKGMSQKEQAKAIEKFKNEA-NVLVS 411
           ++F   R    +I   L   E +A +  G+ +       QK++  AI++ K     +LV+
Sbjct: 247 IVFTNTRAMADRIYGRLVAQEYKAFVLHGEKD-------QKDRKLAIDRLKQGGVKILVA 299

Query: 412 TSVSEEGIDISSVNYVLFYEPVPSEIRMIQRRGRAAR-GEGGQVIVLIAQKTRDEGYYRA 470
           T V+  G+D+  ++ V+ ++   S    + R GR  R G  G  I LI     +      
Sbjct: 300 TDVAARGLDVEGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIE 359

Query: 471 GLAKEKNMKNILKNMQATLN--KKLKELNEENEEESEKTENK--DHYMDLRSVVSSKTSD 526
              K+   +  +K ++ T    KK+K   +    + +K + K        ++    KT++
Sbjct: 360 RYLKQSFERRTIKEVKGTYGGPKKVKASGKAVGVKKKKVDAKGDKKKTGAKAPTKRKTAN 419

Query: 527 KLEENKPTKLDKKSKSGLPNK 547
           + + + P+ + K   + L  +
Sbjct: 420 RPKADAPSLVSKDGMAPLKRR 440