Pairwise Alignments

Query, 752 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 458 a.a., ATP-dependent 23S rRNA helicase DbpA from Xanthomonas campestris pv. campestris strain 8004

 Score = 48.9 bits (115), Expect = 6e-10
 Identities = 57/239 (23%), Positives = 108/239 (45%), Gaps = 30/239 (12%)

Query: 231 RLRDLKENRVIHSITVNKSELLGLNKKIMAMDDNIKYEMLRISSEAVKLEHAIEMLETQG 290
           R+++L   R +H   +     L L++    +D   +  +  I+S   K   ++       
Sbjct: 132 RIQELARKRALH---LGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQSLLF----- 183

Query: 291 KSTFLNYYQKLLTQNTKSAKEITNDPRFIQAVKNLNELDIEH----PKYEKMLEIVKEIL 346
            +TF +  + L  +  K   EIT     ++   N  E+D +     P Y +   +   +L
Sbjct: 184 SATFPDIIRTLARELLKDPVEIT-----VEGADNAPEIDQQFFEVDPTYRQKA-VAGLLL 237

Query: 347 KEN-EKIVIFAQYRDTVQKIVDLLSENEIEAIMFVGQSNKDGKGMSQKEQAKAIEKFKNE 405
           + N E  V+F   R  V ++   L E    A+   G        M Q+++ + + +F N 
Sbjct: 238 RFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGD-------MEQRDRDEVLVRFVNR 290

Query: 406 A-NVLVSTSVSEEGIDISSVNYVLFYEPVPSEIRMIQRR-GRAAR-GEGGQVIVLIAQK 461
           + NVLV++ V+  G+D+  +  V+ YE +P++    + R GR AR G+ G  + L+A +
Sbjct: 291 SCNVLVASDVAARGLDVEDLAAVVNYE-LPTDTETYRHRIGRTARAGKHGLALSLVAPR 348