Pairwise Alignments

Query, 752 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

 Score = 49.7 bits (117), Expect = 3e-10
 Identities = 50/214 (23%), Positives = 96/214 (44%), Gaps = 30/214 (14%)

Query: 339 LEIVKEILKEN-EKIVIFAQYRDTVQKIVDLLSENEIEAIMFVGQSNKDGKGMSQKEQAK 397
           +E++K+IL E  E+ ++F + R+ +  +   L + +I      G+       M Q  +  
Sbjct: 235 VELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGE-------MPQDRRNN 287

Query: 398 AIEKFKN-EANVLVSTSVSEEGIDISSVNYVLFYEPVPSEIRMIQRRGRAAR-GEGGQVI 455
           AI +F+  + N+L++T V+  GID+  +++V+ ++   S    + R GR  R G+ G  I
Sbjct: 288 AISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAI 347

Query: 456 VLIAQKTRDEGYYRAGLAKEKNMKNILKNMQATLNKKLKELNEENEEESEKTENKDHYMD 515
            L+  +  D+                   M A + + +KE  +E   +  + ++K     
Sbjct: 348 SLV--EAHDQ------------------PMMARVERYIKEEVKERFIDGLRPKHKKPVFK 387

Query: 516 LRSVVSSKTSDKLEENKPTKLDKKSKSGLPNKAT 549
            +     KT+DK    K T    K+K+     AT
Sbjct: 388 KKKKDIKKTADKGAVKKKTTSKPKAKATKKKAAT 421