Pairwise Alignments

Query, 752 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 613 a.a., ATP-dependent RNA helicase SrmB (RefSeq) from Shewanella amazonensis SB2B

 Score = 58.2 bits (139), Expect = 1e-12
 Identities = 73/307 (23%), Positives = 127/307 (41%), Gaps = 65/307 (21%)

Query: 309 AKEITNDPRFIQAVKNLNE----------LDIEHPKYEKMLEIVKEILKENEKIVIFAQY 358
           A+E+ N+P F+++    +E           D +  K+  +  ++K+  +E ++ ++F + 
Sbjct: 197 ARELLNEPMFVESEPPRSEKAKIHQWIHLADDKDHKFALLTHLLKQ--EEVKRAIVFCKT 254

Query: 359 RDTVQKIVDLLSENEIEAIMFVGQSNKDGKGMSQKEQAKAIEKF-KNEANVLVSTSVSEE 417
           RD V  +   L +  I      G        M QK++ +A+ +F K E NVL++T V+  
Sbjct: 255 RDVVASLEGQLQQAGIACAFMRGD-------MDQKKRFQALGRFTKGEVNVLLATDVAAR 307

Query: 418 GIDISSVNYVLFYEPVPSEIRMIQRRGRAAR-GEGGQVIVLIAQKTRDEGYYRAGLAK-E 475
           GIDI  + +V+ ++   S    + R GR  R G  G  I L+      E +    L K E
Sbjct: 308 GIDIEDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLV------EAHDMRILGKVE 361

Query: 476 KNMKNILKNMQATLNKKLKELNEENEEESEKTENKDHYMDLRSVVSSKTSDKLEENKPTK 535
           + ++  LK       + ++EL  +++E    T+ K         V +K +    +N   K
Sbjct: 362 RYIEQPLK------RRVIEELRPKHKEAKVPTKKK---------VKAKDAKAKAKNAKPK 406

Query: 536 LDKKSKSGLPNKATIIVDSRERHIGRYLSEKAEVEFKTLEIGDYILSDRVAVERKTAEDF 595
                    PN  T   DSR                     GD + S   A  R+T  D 
Sbjct: 407 AAPGRGPATPNAKT--ADSRG--------------------GDNVRSGGRASTRRTGTDE 444

Query: 596 ENSIIDK 602
           +   +DK
Sbjct: 445 KGDGLDK 451