Pairwise Alignments

Query, 752 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 441 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score = 52.0 bits (123), Expect = 6e-11
 Identities = 45/175 (25%), Positives = 85/175 (48%), Gaps = 20/175 (11%)

Query: 311 EITNDPRFIQAVKNLNELDIEHPKY----EKMLEIVKEILKENE--KIVIFAQYRDTVQK 364
           ++  DP  IQ ++     DIE   Y         ++ E++K  +  ++++FA  + +   
Sbjct: 223 KLLTDPVEIQ-MQEAQSADIEQRVYTVNRSNKTALLAELIKVRQWRQVLVFASAKRSCDH 281

Query: 365 IVDLLSENEIEAIMFVGQSNKDGKGMSQKEQAKAIEKFKN-EANVLVSTSVSEEGIDISS 423
           +   L +  I A +F G         +Q  +++ ++ FKN E  VL++T ++  GIDI  
Sbjct: 282 LAQKLEKRGISAQVFHGDK-------AQGARSRVLDGFKNGEITVLIATDIAARGIDIDK 334

Query: 424 VNYVLFYEPVPSEIRMIQRRGRAAR-GEGGQVIVLIAQKTRDEGYYRAGLAKEKN 477
           +  V+ +E   S    + R GR+ R GE G+ I LI+     + Y+   + ++KN
Sbjct: 335 LPVVINFELPRSPADYLHRIGRSGRAGETGEAISLISH----DEYHHFKVIEKKN 385



 Score = 33.5 bits (75), Expect = 2e-05
 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 15/115 (13%)

Query: 37  TGLGKTAIAALTIAG-ILSKRNGK-----VLIIAPSRPLVDQHFKSMNQFLNIDSE---- 86
           TG GKTA  AL +   ++ +R G       L++ P+R L  Q   S   F++  +E    
Sbjct: 70  TGSGKTAAFALPLLQKLVGQRAGGGNHVGALVLVPTRELAQQVADS---FISYGAELAPR 126

Query: 87  -KIVILNGKISPKKREAMWESGK-IFIATPQVAENDIISKILKPSQFSLLIADEA 139
            K++ + G +S   +      G  I +ATP    + + S  +K SQ   L+ DEA
Sbjct: 127 AKVIAVFGGVSVNSQMLALRGGADILVATPGRLLDLLGSNAVKLSQLKALVLDEA 181