Pairwise Alignments

Query, 752 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 419 a.a., ATP-dependent RNA helicase SrmB (RefSeq) from Shewanella loihica PV-4

 Score = 56.6 bits (135), Expect = 2e-12
 Identities = 72/321 (22%), Positives = 139/321 (43%), Gaps = 29/321 (9%)

Query: 196 DVSPYVAKVKMRPKRVELPEEFEVNLNLLKNALKDRLRDLKENRVIHSITVNKSELLGLN 255
           D++     V   P+   L E  ++ +     A   RL +  +  +  + +V   E+L L+
Sbjct: 116 DIAIITGGVPYAPQEQALKENIDILV-----ATPGRLMEYLDKELFDAQSV---EILVLD 167

Query: 256 KKIMAMDDNIKYEMLRISSEAVKLEHAIEMLETQGKSTFLNYYQKLLTQN-TKSAKEITN 314
           +    +D      +  I+ EA + +H +    T        + + LLT   T   K   +
Sbjct: 168 EADRMLDMGFSSAVQSIAIEAQQRKHNMLFSATLEGGGVSRFAEMLLTNPVTIETKPPRS 227

Query: 315 DPRFIQAVKNLNELDIEHPKYEKMLEIVKEILKENEKIVIFAQYRDTVQKIVDLLSENEI 374
           +   I    +L + D EH K+  + +I+K   +E  + ++F + R+ V  +   L +  I
Sbjct: 228 EKAKIHQWMHLAD-DKEH-KFALLCDILKR--EEVSRAIVFVKTREVVASLEGQLQQAGI 283

Query: 375 EAIMFVGQSNKDGKGMSQKEQAKAIEKF-KNEANVLVSTSVSEEGIDISSVNYVLFYEPV 433
                 G        M QK + +A+ +F K E NVL++T V+  GIDI  + +V+ ++  
Sbjct: 284 HCAFMRGD-------MEQKARFQALGRFTKGEVNVLLATDVAARGIDIDGITHVINFDMP 336

Query: 434 PSEIRMIQRRGRAAR-GEGGQVIVLIAQK-----TRDEGYYRAGLAKE--KNMKNILKNM 485
            S    + R GR  R G  G  I L+         + E Y    L +    +++   K  
Sbjct: 337 RSADTYVHRIGRTGRAGNKGTAISLVEAHDMRVVAKIERYIEQPLKRRVIDSLRPKHKEA 396

Query: 486 QATLNKKLKELNEENEEESEK 506
           +    KK+K  ++++ ++++K
Sbjct: 397 KVPTKKKVKSSDKKSPKKAKK 417



 Score = 35.8 bits (81), Expect = 5e-06
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 7/130 (5%)

Query: 17  IYQQLVVASALKQNTLCVLGTGLGKTA---IAALTIAGILSKR---NGKVLIIAPSRPLV 70
           I QQ +  +   ++ L    TG GKTA   + AL       +R     +VLI+AP+R L 
Sbjct: 40  IQQQTIPLALEHKDILARAPTGTGKTASFLLPALQHLLDFPRRYSGQARVLILAPTRELA 99

Query: 71  DQ-HFKSMNQFLNIDSEKIVILNGKISPKKREAMWESGKIFIATPQVAENDIISKILKPS 129
            Q H  + +    +  +  +I  G     + +A+ E+  I +ATP      +  ++    
Sbjct: 100 SQVHRYASHLATGLGLDIAIITGGVPYAPQEQALKENIDILVATPGRLMEYLDKELFDAQ 159

Query: 130 QFSLLIADEA 139
              +L+ DEA
Sbjct: 160 SVEILVLDEA 169