Pairwise Alignments

Query, 752 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 535 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 46.6 bits (109), Expect = 3e-09
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 14/133 (10%)

Query: 334 KYEKMLEIVKEILKEN-EKIVIFAQYRDTVQKIVDLLSENEIEAIMFVGQSNKDGKGMSQ 392
           K +K   +++ I +EN +++++F++ +    ++   L + EI A    G         SQ
Sbjct: 227 KTQKSALLIQLIKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNK-------SQ 279

Query: 393 KEQAKAIEKFKN-EANVLVSTSVSEEGIDISSVNYVLFYE--PVPSE-IRMIQRRGRAAR 448
             + KA+  FK+ E  VLV+T ++  G+DI  +  V+ ++   VP + +  I R GRA  
Sbjct: 280 GARTKALADFKSGEVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRA-- 337

Query: 449 GEGGQVIVLIAQK 461
           G  GQ + L++ +
Sbjct: 338 GATGQAVSLVSSE 350