Pairwise Alignments

Query, 752 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 456 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 54.7 bits (130), Expect = 1e-11
 Identities = 60/269 (22%), Positives = 118/269 (43%), Gaps = 38/269 (14%)

Query: 311 EITNDPRFIQAVKNLNELDIEHPKYE----KMLEIVKEILKENE--KIVIFAQYRDTVQK 364
           ++ N P+++   +N     +E   Y     +  E++ E++  N   ++++FA  ++  + 
Sbjct: 197 KMLNQPQWVNVAENTTASTVEQLVYRVDKRRKAELLSELVGRNNWRQVLVFASTKECAEH 256

Query: 365 IVDLLSENEIEAIMFVGQSNKDGKGMSQKEQAKAIEKFK-NEANVLVSTSVSEEGIDISS 423
           ++  L+ + I A +F G   +  +        + ++ FK  +  VLV+T V+  G+DI +
Sbjct: 257 LLQELTLDGISAGVFHGDKTQGARN-------RVLDDFKAGKLRVLVATDVAARGLDIQA 309

Query: 424 VNYVLFYE-PVPSE--IRMIQRRGRAARGEGGQVIVLIAQKTRDEGYYRAGLAKEKNMKN 480
           +  V+  E P  +E  +  I R GRA  G  G+ I  ++    +                
Sbjct: 310 LPLVINLELPFLAEDYVHRIGRTGRA--GLSGRAISFVSPADDE---------------- 351

Query: 481 ILKNMQATLNKKLKELNEENEEESEKTENKDHYMDLRSVVSSKTSDKLEENKPTKLDKKS 540
           +L  ++A + +KL    +   EE   T     Y DL  VV++KT    +  K   + K S
Sbjct: 352 MLAEIEALIGEKLPVTVQPGYEEG--TPLPARYRDL-PVVTTKTKWSYKAPKDRTIGKSS 408

Query: 541 KSGLPNKATIIVDSRERHIGRYLSEKAEV 569
             G  +++           G+Y  +KA+V
Sbjct: 409 AGGKSSESQARARKSPSREGKYSKDKAKV 437