Pairwise Alignments

Query, 752 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 443 a.a., ATP-dependent RNA helicase SrmB from Klebsiella michiganensis M5al

 Score = 47.0 bits (110), Expect = 2e-09
 Identities = 52/233 (22%), Positives = 100/233 (42%), Gaps = 29/233 (12%)

Query: 309 AKEITNDPRFIQAVKNLNELDIEHPKYEKMLEI------VKEILKENE--KIVIFAQYRD 360
           A+ +  +P  + A  +  E    H  Y +  +I      +  +LK+ E  + ++F + R+
Sbjct: 200 AERLLEEPAEVSATPSTRERKKIHQWYYRADDIKHKTALLVHLLKQPEATRSIVFVRKRE 259

Query: 361 TVQKIVDLLSENEIEAIMFVGQSNKDGKGMSQKEQAKAIEKFKN-EANVLVSTSVSEEGI 419
            V ++   L E  I      G+       M Q ++ +AI +  +   NVL++T ++  GI
Sbjct: 260 RVHELAGWLREAGINTCWLEGE-------MVQAKRNEAISRLTDGRINVLIATDIAARGI 312

Query: 420 DISSVNYVLFYEPVPSEIRMIQRRGRAAR-GEGGQVIVLIAQKTR----DEGYYRAGLAK 474
           DI+ V++V  ++   +    + R GR  R G+ G  I L+           G Y     K
Sbjct: 313 DIADVSHVFNFDLPRTADIYLHRIGRTGRAGKKGTAISLVEAHDHLLLGKIGRYIEEPLK 372

Query: 475 EKNMKNILKNMQATLNKK--------LKELNEENEEESEKTENKDHYMDLRSV 519
            + +  +    +A   K+        L +  E+ E+E EK   K  + D +++
Sbjct: 373 ARVIDELRPTTRAPSEKQTGKPSKKVLAKRAEKKEKEKEKPRVKKRHRDTKNI 425