Pairwise Alignments

Query, 480 a.a., RNA-splicing ligase RtcB from Methanococcus maripaludis S2

Subject, 394 a.a., conserved hypothetical protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  129 bits (323), Expect = 2e-34
 Identities = 134/447 (29%), Positives = 193/447 (43%), Gaps = 100/447 (22%)

Query: 39  LQEDVFEQIANVACLPGIQKYSLAMPDCHYGYGFCIGGVAAFDEVTGVISPGGVGFDINC 98
           + +  +EQI NV  L  + + ++ MPD H GY  CIGGVA    + G ISPG VG+DI C
Sbjct: 43  IDDKAWEQIENVLSLDCLVRLAI-MPDVHAGYDLCIGGVAL---LAGTISPGFVGYDIGC 98

Query: 99  GVRLVKTNLTKNDVTPKL---KELLSEIFKNVPSGLGSKGKIRITKDEIDSVLEEGVSWA 155
           G+  V T  T +++ P     + L   I  ++P G   +G                    
Sbjct: 99  GMCHVNTGRTVDELLPDALSRQRLFDRILHDIPVGTDMRGP------------------- 139

Query: 156 VEEEYGWERDIKHIEEHGKMKEADPTLVSDNAKKRGLPQLGSLGSGNHFLEVQYVDEIFD 215
                  E D          K    ++V+  A+     Q+ +LG GNHF+EV        
Sbjct: 140 ------GEFDAPRFLSASGDKGLTASVVAKAAR-----QMATLGGGNHFIEV-------- 180

Query: 216 EEAAKTFGV-SPDQVVLMIHTGSRGLGHQICADYLRYMENAAKKYNIKLPDRQLACAPIN 274
                  GV S  +V + +H+GSR  G  I A Y+R      + + ++ P          
Sbjct: 181 -------GVNSRSEVGITLHSGSRRPGWDIAAWYMRQ----GRLFALRTP---------- 219

Query: 275 SEEGQKYFKAMSCGANYAWANRQLITHWIRESFESVFKTSAEDLEMDIIYDVAHNIAKKE 334
              GQ Y K M     YA ANR+ +   + ++F S+ + +   L    I +  HN A+  
Sbjct: 220 --MGQAYLKDMQWAQEYALANRRAMLALVLKAFPSLDEATISHLLASTINE-NHNHAE-- 274

Query: 335 QHLVDGVLKNVVVHRKGATRAFGPGHAEIPSDYVNIGQPVIIPGDMGTASYLMHGTEKAM 394
              VDG     V+HRKGAT A               GQP IIP +     Y+  G   A 
Sbjct: 275 ---VDGA---NVLHRKGATPAAS-------------GQPGIIPANQRDGVYITRGLGNA- 314

Query: 395 EQTFGSTAHGAGRALSRVKALKLYTGNEVQEALQKKGILVMADSKGVIAEECPEAYKDIE 454
                S +HGAGR +SR KA       ++    Q  GIL   D KGV+ +E P+AYK I 
Sbjct: 315 -YYLSSASHGAGRVMSRQKARAHI--EQMTFERQMHGILCRTD-KGVL-DEAPDAYKPIA 369

Query: 455 NVADICHDSGISLKVA-KMKPMGVVKG 480
            V  +    G+ + V    +P+ V+KG
Sbjct: 370 PV--LAAQDGLLVDVVDHFRPVVVIKG 394