Pairwise Alignments

Query, 228 a.a., coenzyme F420 hydrogenase subunit gamma from Methanococcus maripaludis S2

Subject, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 46.2 bits (108), Expect = 9e-10
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 15/62 (24%)

Query: 170 VINKSLCMGCGSCAAACPTRAVSMDAGRP---------------LVDKEICIKCGACSVQ 214
           V +   C+ CG+C  +CPT  + M   R                L+D+EIC+ CG C   
Sbjct: 78  VFDAGSCINCGNCVESCPTNVLEMGTLRKEAKELLWNVPKIINLLIDEEICVSCGTCENA 137

Query: 215 CP 216
           CP
Sbjct: 138 CP 139



 Score = 45.1 bits (105), Expect = 2e-09
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 7/70 (10%)

Query: 166 LIVKVINKSLCMGCGSCAAACPTRAVS-MDAGRPLVDKEICIKCGACSVQCP------RI 218
           +I  +I++ +C+ CG+C  ACP  A+S  + G   +D  IC+ C  C   CP        
Sbjct: 118 IINLLIDEEICVSCGTCENACPVDAISHNNTGLYEIDVNICVSCKNCLKVCPVENAIVTY 177

Query: 219 RFPELIEKIE 228
             P L EKIE
Sbjct: 178 DEPGLSEKIE 187



 Score = 43.9 bits (102), Expect = 4e-09
 Identities = 48/160 (30%), Positives = 65/160 (40%), Gaps = 27/160 (16%)

Query: 79  KILVALGACAASGNITRFSKGNQPSKPVHDSFAPLTEVVKCDLAIPGCPPSPESIVAVVL 138
           +I V+ G C  +  +   S  N     +  +       V C   +  CP       A+V 
Sbjct: 126 EICVSCGTCENACPVDAISHNNTGLYEIDVNIC-----VSCKNCLKVCPVEN----AIVT 176

Query: 139 AALNGDMEYLEPYAELAKYGSEACGCD------LIVKV--INKSLCMGCGSCAAACPTRA 190
               G  E +E  A+  K+  E  G D      +I ++  I  SLC+GCG+C   CP   
Sbjct: 177 YDEPGLSEKIE-IAQNTKFDRERLGSDFKEESDVIAEIPRIVPSLCIGCGNCVDVCPG-- 233

Query: 191 VSMDAGRPLVDKEICIKCGACSVQCP----RIRFPELIEK 226
            S+D  R  V    CIK G C   CP    RI  PE I K
Sbjct: 234 -SIDLERLKVTS--CIKSGKCLEVCPTTAIRIGVPEKITK 270



 Score = 42.0 bits (97), Expect = 2e-08
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 176 CMGCGSCAAACPTRAVSMDAGR------PLVDKEICIKCGACSVQCP 216
           C+ C +C  +CP+ A+SM+         P+ D   CI CG C   CP
Sbjct: 49  CISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCP 95



 Score = 41.2 bits (95), Expect = 3e-08
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 170 VINKSLCMGCGSCAAACPTRA---VSMDAGRPLVDKEICIKCGACSVQCP 216
           ++++  C+GC  C  AC       +S +   P ++ E C++CG C   CP
Sbjct: 277 IVDEEKCIGCRICYRACNVPEAILISKETNLPYINPEYCVRCGLCQNACP 326



 Score = 31.6 bits (70), Expect = 2e-05
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 9/65 (13%)

Query: 160 EACGCDLIVKVINKSLCMGCGSCAAACPTRAVSMDAGRPL---------VDKEICIKCGA 210
           + C   + ++ +  + C+  G C   CPT A+ +     +         VD+E CI C  
Sbjct: 229 DVCPGSIDLERLKVTSCIKSGKCLEVCPTTAIRIGVPEKITKRTAECYIVDEEKCIGCRI 288

Query: 211 CSVQC 215
           C   C
Sbjct: 289 CYRAC 293



 Score = 27.7 bits (60), Expect = 3e-04
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 171 INKSLCMGCGSCAAACPTRAV 191
           IN   C+ CG C  ACP  A+
Sbjct: 310 INPEYCVRCGLCQNACPVDAI 330



 Score = 24.3 bits (51), Expect = 0.004
 Identities = 8/14 (57%), Positives = 8/14 (57%)

Query: 203 EICIKCGACSVQCP 216
           E CI C AC   CP
Sbjct: 47  EKCISCSACKESCP 60