Pairwise Alignments

Query, 228 a.a., coenzyme F420 hydrogenase subunit gamma from Methanococcus maripaludis S2

Subject, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 50.1 bits (118), Expect = 6e-11
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query: 176 CMGCGSCAAACPTRAVSMDAGRPLVDKEICIKCGACSVQCP 216
           C+GCG C + CP  A+S++  + +VDK  CI C  C+  CP
Sbjct: 135 CVGCGVCISECPVGALSIEGEKAVVDKNSCIYCSICAQTCP 175



 Score = 43.5 bits (101), Expect = 6e-09
 Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 30/126 (23%)

Query: 117 VKCDLAIPGCPPSPESIVAVVLAALNGDMEYLEPYAELAKYGSEACGCDLIVK------- 169
           V C   +  CP     +  VV  A        EP A       +  GC + +        
Sbjct: 95  VGCMKCVEACPDDYVGMEGVVEPAKRNITLPKEPIAVT----EDCVGCGVCISECPVGAL 150

Query: 170 -------VINKSLCMGCGSCAAACPTRAVSMDAGRPL-----------VDKEICIKCGAC 211
                  V++K+ C+ C  CA  CP  A+ + AG+             VD ++CI CG C
Sbjct: 151 SIEGEKAVVDKNSCIYCSICAQTCPWNAIFV-AGKKSPKRDKNIVKFSVDSDLCIGCGDC 209

Query: 212 SVQCPR 217
           + +CPR
Sbjct: 210 TDKCPR 215



 Score = 42.7 bits (99), Expect = 1e-08
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 14/72 (19%)

Query: 159 SEACGCDLIVK----VINKSLCMGCGSCAAACPTRAVSM--DAGRP--------LVDKEI 204
           ++ C  DLIV      +    C  CG C AACP  A+ +  + G P        + D+E 
Sbjct: 210 TDKCPRDLIVLNEMVAVPPKGCPACGLCMAACPVDAIELVVEYGSPKPITDEGIVWDEEK 269

Query: 205 CIKCGACSVQCP 216
           C  CG C+++CP
Sbjct: 270 CAYCGPCAIKCP 281



 Score = 41.2 bits (95), Expect = 3e-08
 Identities = 31/117 (26%), Positives = 45/117 (38%), Gaps = 24/117 (20%)

Query: 119 CDLAIPGCPPSPESIVAVVLAALNG----DMEYLEPYAELAKYGSEACGCDLIVKVIN-- 172
           C   +  CP    ++  +    LNG     +EY     +L     + C  +L  K+ N  
Sbjct: 35  CGNCVNACPNDALNLREI---ELNGKTIKQIEYFPTKCDLCGECVKVCPNNL--KIENDK 89

Query: 173 -KSLCMGCGSCAAACPTRAVSMDA------------GRPLVDKEICIKCGACSVQCP 216
            K  C+GC  C  ACP   V M+               P+   E C+ CG C  +CP
Sbjct: 90  LKGFCVGCMKCVEACPDDYVGMEGVVEPAKRNITLPKEPIAVTEDCVGCGVCISECP 146



 Score = 37.4 bits (85), Expect = 4e-07
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 11/58 (18%)

Query: 170 VINKSLCMGCGSCAAACPTRAVSMDAGRPLV-----------DKEICIKCGACSVQCP 216
           V ++  C  CG CA  CP  A+++   + L            + ++CI+CGAC   CP
Sbjct: 264 VWDEEKCAYCGPCAIKCPNNAINVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCP 321



 Score = 32.3 bits (72), Expect = 1e-05
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 8/50 (16%)

Query: 175 LCMGCGSCAAACPTRAVSM--------DAGRPLVDKEICIKCGACSVQCP 216
           +C+ CG+C  +CP  A+ +        +  R      +C  CG C   CP
Sbjct: 309 MCIRCGACVQSCPNDALRIGKIIHDGKEYERIEFSPNLCDSCGKCIETCP 358



 Score = 30.4 bits (67), Expect = 5e-05
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 8/50 (16%)

Query: 175 LCMGCGSCAAACPTRAVSMDA----GRPLVDKEI----CIKCGACSVQCP 216
           +C  CG+C  ACP  A+++      G+ +   E     C  CG C   CP
Sbjct: 31  VCQLCGNCVNACPNDALNLREIELNGKTIKQIEYFPTKCDLCGECVKVCP 80



 Score = 30.0 bits (66), Expect = 7e-05
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 174 SLCMGCGSCAAACPTRAVSMDAGRPLVDKE-ICIKCGACSVQCPRIR 219
           +LC  CG C   CP   +++  G+P    E  C+ C  C   C + +
Sbjct: 345 NLCDSCGKCIETCPYDMLNL-TGKPEKPLEGFCVMCLKCIEACDKAK 390