Pairwise Alignments

Query, 228 a.a., coenzyme F420 hydrogenase subunit gamma from Methanococcus maripaludis S2

Subject, 317 a.a., periplasmic [NiFeSe] hydrogenase, small subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 42.0 bits (97), Expect = 1e-08
 Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 29/164 (17%)

Query: 7   VQLSSCCGCLVSLADT-YEQLLDVL-GAIDLVYSQT---------LADVREIPDDVD--- 52
           +Q   C GC V+L ++ +  + DVL   I L +  T         +  +R++ +      
Sbjct: 47  LQGQGCTGCSVTLLNSVHPSIADVLLKVISLEFHPTVMAWEGEHAIEHMRKVAEKFKGKF 106

Query: 53  IVLLEGSV--------CL---SDHHAMEVALESRKKGK---ILVALGACAASGNITRFSK 98
            +++EGSV        C+   ++HH + +    ++ G     ++A+G CAA G I   ++
Sbjct: 107 FLVIEGSVPVEADGKYCIIGEANHHEISMVDALKEFGPNAAAVLAVGTCAAYGGIPA-AE 165

Query: 99  GNQPSKPVHDSFAPLTEVVKCDLAIPGCPPSPESIVAVVLAALN 142
           G++        F     +    + IPGCPP P+ IV  V+ AL+
Sbjct: 166 GSETGATAVSKFLGDNGIKTPVVNIPGCPPHPDWIVGTVVLALD 209