Pairwise Alignments

Query, 242 a.a., ribonuclease HII from Methanococcus maripaludis S2

Subject, 218 a.a., RNase HII from Pseudomonas syringae pv. syringae B728a

 Score = 54.7 bits (130), Expect = 1e-12
 Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 38/187 (20%)

Query: 20  EKIIVGLDEAGRGPVLGPMVIASVKIDEKNLYKLNDLELKDSKQLSKKKREELYIIINEM 79
           E ++ G+DE GRGP+ G +V A+V +D         L L DSK+L++ +RE+LY+ I E 
Sbjct: 12  EDLVAGVDEVGRGPLCGAVVTAAVILDPTRPI----LGLNDSKKLTEARREKLYVEIQEK 67

Query: 80  CDVEKIV-IDPETIDKQMEIINLNKIELSAFSKLSNHFIRENDNISI-----YIDACSSS 133
                I   + E ID Q+ I++   + +           R  + +SI      ID     
Sbjct: 68  ALCWFIARAEVEEID-QLNILHATMLAMQ----------RAVEGLSITPRLALIDGNRCP 116

Query: 134 EQSFSNQFKAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDRVIEEYKETFGEIG-- 191
           + S  +   A ++          K D     ++AASI+AKV+RDR +  ++  +   G  
Sbjct: 117 QLSVPS---APVV----------KGDSKVPAIAAASILAKVSRDREMAAFELIYPGYGIG 163

Query: 192 --SGYPS 196
              GYP+
Sbjct: 164 GHKGYPT 170