Pairwise Alignments

Query, 242 a.a., ribonuclease HII from Methanococcus maripaludis S2

Subject, 215 a.a., RNase HII from Synechococcus elongatus PCC 7942

 Score = 58.5 bits (140), Expect = 1e-13
 Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 19/172 (11%)

Query: 17  GSNEKIIVGLDEAGRGPVLGPMVIASVKIDEKNLYKLNDLELKDSKQLSKKKREELYIII 76
           G   + + G+DE GRG + GP+V A+V + E  +  L    + DSK+LS+++R++LY +I
Sbjct: 15  GDRWQTVAGVDEVGRGCLFGPVVTAAVILPETAIAPLQQAGVTDSKRLSQRQRQQLYPLI 74

Query: 77  NEMCDVEKIVIDPETIDKQMEIINLNKIEL-SAFSKLSNHFIRENDNISIYIDACSSSEQ 135
            E+       +      ++  I+    + +  A +KL     R        ID       
Sbjct: 75  CEVALATGWGLASVAEIERWNILQATFLAMRRAIAKLDRPISR------CLID------- 121

Query: 136 SFSNQFKAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDRVIEEYKETF 187
              NQ   +L      +I   + D +   ++AASI+AKV RDR+IE   E +
Sbjct: 122 --GNQQVPQLTYPQTTVI---QGDRHCITIAAASILAKVWRDRLIERLDERY 168