Pairwise Alignments

Query, 242 a.a., ribonuclease HII from Methanococcus maripaludis S2

Subject, 208 a.a., ribonuclease H (RefSeq) from Shewanella loihica PV-4

 Score = 63.5 bits (153), Expect = 3e-15
 Identities = 56/177 (31%), Positives = 82/177 (46%), Gaps = 25/177 (14%)

Query: 25  GLDEAGRGPVLGPMVIASVKIDEKNLYKLNDLELKDSKQLSKKKREELYI-IINEMCDVE 83
           G+DE GRGP++G +V A+V +D  N  +     L DSK+LS+KKR+ LY  I+ +  DV 
Sbjct: 22  GVDEVGRGPLVGDVVTAAVVLDPNNPIE----GLNDSKKLSEKKRDALYEEILAKALDVS 77

Query: 84  KIVIDPETIDKQMEIINLNKIELSAFSKLSNHFIRENDNISIYIDACSSSEQSFSNQFKA 143
                P  ID+    +N+    + A  +         D + I                  
Sbjct: 78  VGRCSPLEIDE----LNILHATMLAMQRAVAGLRARPDRVLI------------DGNRVP 121

Query: 144 KLINKNVEIIAEHKADENYKIVSAASIIAKVTRDRVIEEYKETFGEIG----SGYPS 196
              ++ +E  A  K D     +SAASI+AKV RDR +E   E + E G     GYP+
Sbjct: 122 DFTDETLEGHAVIKGDGLIPAISAASIVAKVVRDREMEALDERYPEYGFAKHKGYPT 178