Pairwise Alignments

Query, 242 a.a., ribonuclease HII from Methanococcus maripaludis S2

Subject, 200 a.a., ribonuclease HII (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 47.4 bits (111), Expect = 2e-10
 Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 27/184 (14%)

Query: 18  SNEKIIVGLDEAGRGPVLGPMVIASVKIDEKNLYKLNDLELKDSKQLSKKKREELYIIIN 77
           + + I  G DEAGRG + G +  A+V + +    +L    L DSKQL++K+R  L  +I 
Sbjct: 7   NKDLIEAGCDEAGRGCLAGSVYAAAVILPKDFKNEL----LNDSKQLTEKQRYALREVIE 62

Query: 78  EMCDVEKI-VIDPETIDKQMEIINLNKIELSAFSKLSNHFIRENDNISIYIDACSSSEQS 136
           +      + V+ PE ID+         I +   S L+ H  R  D +S+           
Sbjct: 63  KEALAWAVGVVSPEEIDE---------INILRASFLAMH--RAVDQLSVRPQHLLIDGNR 111

Query: 137 FSNQFKAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRD----RVIEEYKETFGEIGS 192
           F+          ++      K D  Y  ++AASI+AK  RD    R+ EEY         
Sbjct: 112 FNKY-------PDIPHTTVIKGDGKYLSIAAASILAKTYRDDYMNRLHEEYPFYDWNKNK 164

Query: 193 GYPS 196
           GYP+
Sbjct: 165 GYPT 168