Pairwise Alignments

Query, 727 a.a., elongation factor EF-2 from Methanococcus maripaludis S2

Subject, 603 a.a., virulence regulator BipA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  162 bits (410), Expect = 5e-44
 Identities = 124/464 (26%), Positives = 212/464 (45%), Gaps = 88/464 (18%)

Query: 19  EQIRNMGICAHIDHGKTTLSDNLLAGAGMISKELAGDQLALDFDEEEAARGITIYAANVS 78
           E +RN+ I AH+DHGKTTL D LL+ +G ++      +  +D ++ E  RGITI A N +
Sbjct: 3   ENLRNIAIIAHVDHGKTTLVDKLLSQSGTLATRGEATERVMDSNDLEKERGITILAKNTA 62

Query: 79  MVHEYSGKEYLINLIDTPGHVDFGGDVTRAMRAIDGAVVVCCAVEGVMPQTETVLRQALK 138
           +       +Y IN++DTPGH DFGG+V R +  +D  +++  AV+G MPQT  V ++A  
Sbjct: 63  I----KWNDYRINIVDTPGHADFGGEVERVLSMVDSVLLLVDAVDGPMPQTRFVTKKAFA 118

Query: 139 EKVKPVLFINKVDRLINELKLTPEELQGRFMKIIAEVNKLIEKMAPEEFKKEWLCDVANG 198
           + +KP++ INK+DR              R   +I +V  L + +   + + ++       
Sbjct: 119 QGLKPIVVINKIDR-----------PGARPDWVIDQVFDLFDNLGATDEQLDF------- 160

Query: 199 KVAFGSAYNNWAISVPYMQRSGISFKDIIDYCEQENQKELAEKAPLHEVVLDMSIKHLPN 258
            + + SA N +A   P          D++            +  PL + +++        
Sbjct: 161 PIVYASALNGFATLDP----------DVVS----------EDMTPLFQTIVE-------- 192

Query: 259 PLTAQKYRIPNIWKGDAESTIGKSMVACDPNGPLAGVVTKIIVDKHAGAISACRLFSGRI 318
                      +   DA++           +GP    ++++  + + G I   R+  G I
Sbjct: 193 ----------KVSSPDADA-----------DGPFQMQISQLDYNSYVGVIGVGRINRGSI 231

Query: 319 KQGDDLYLVGSKQKAR---AQQVSIFMGAERVQVPSISAGNICALTGLREATAGETVCSP 375
           K    + ++G+  K R     QV  +MG ER +V   +AG+I A+TGL E    +TVC+ 
Sbjct: 232 KTNQQVSVIGADGKVRNGKMGQVLGYMGLERTEVDVANAGDIVAITGLGELKISDTVCAA 291

Query: 376 SEILEPGFESLSHTSEPVITVAIEAKNTKDLPK---------LIEILRQIAREDNTVRVE 426
             +       LS   EP +T+  +   +    K         ++E L+Q    +  +RVE
Sbjct: 292 GNV--EAMPPLS-VDEPTLTMTFQVNTSPFAGKEGKYVTSRNILERLQQELVHNVALRVE 348

Query: 427 INEETGEHLISGMGELHIEVITNTKIGRDGGIEVDVGEPIVVYR 470
             +      +SG GELH+ ++      R  G E+ V  P V+ +
Sbjct: 349 ETDSPDRFAVSGRGELHLSILIENM--RREGYELAVSRPEVILK 390



 Score = 30.4 bits (67), Expect = 3e-04
 Identities = 14/66 (21%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 628 LLEPMQSVYINTPQDYMGDGMKEINNRRGQILDMEQEGDMSI-IKSSVPVAEMFGFAGAI 686
           L EP +++ ++  +++ G  ++++  R+ ++ DM+ +G   + +   +P   + GF    
Sbjct: 396 LCEPFETLTVDVEEEHQGTVIEKLGIRKAEMKDMQLDGKGRVRVDFVIPSRGLIGFQTEF 455

Query: 687 RGATQG 692
             AT G
Sbjct: 456 LTATSG 461