Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1399 a.a., DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6) from Pseudomonas fluorescens FW300-N2E2

 Score = 55.8 bits (133), Expect = 7e-12
 Identities = 26/33 (78%), Positives = 28/33 (84%)

Query: 54  VEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVA 86
           V  GEAVGV+AAQSIGEPGTQ+TMRTFH  G A
Sbjct: 909 VNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAA 941



 Score = 43.5 bits (101), Expect = 4e-08
 Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 13/135 (9%)

Query: 242  SNIKEVFDIEGVDTTKTTTNNIVEIQDVLGIEAARNAIIYEMDATLGNQGLTVDKRHLMM 301
            + I++V+ ++GV         I+        +  R   I E   +   +G  ++  H+++
Sbjct: 1235 NEIQDVYRLQGVKINDKHIETILR-------QMLRKVEIAESGDSSFIKGDQMELTHVLV 1287

Query: 302  VADLMCT-DGVVKPIGRHGIGGEKASV-----LARAAFEETVKHLYSASMRGYVDELGGV 355
              + + T D  V    R  +G  KAS+     ++ A+F+ET + L  A++ G  D L G+
Sbjct: 1288 ENERLATEDKFVSKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGL 1347

Query: 356  VENIIVGKPISMGTG 370
             EN++VG+ I  GTG
Sbjct: 1348 KENVVVGRLIPAGTG 1362