Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1399 a.a., DNA-directed RNA polymerase, beta' subunit, predominant form from Pseudomonas stutzeri RCH2

 Score = 55.8 bits (133), Expect = 7e-12
 Identities = 26/33 (78%), Positives = 28/33 (84%)

Query: 54  VEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVA 86
           V  GEAVGV+AAQSIGEPGTQ+TMRTFH  G A
Sbjct: 909 VNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAA 941



 Score = 39.7 bits (91), Expect = 5e-07
 Identities = 19/45 (42%), Positives = 30/45 (66%)

Query: 326  SVLARAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTG 370
            S ++ A+F+ET + L  A++ G  D L G+ EN++VG+ I  GTG
Sbjct: 1318 SFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTG 1362



 Score = 26.2 bits (56), Expect = 0.006
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 89   NVTLGLPRMIEIVDAR--KEPS---TPTMTIYLNDEFKGNREKAAT 129
            ++T GLPR+ ++ +AR  KEPS     + TI    E KG R    T
Sbjct: 1133 DITGGLPRVADLFEARRPKEPSILAEISGTISFGKETKGKRRLVIT 1178