Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

 Score = 58.2 bits (139), Expect = 1e-12
 Identities = 27/34 (79%), Positives = 29/34 (85%)

Query: 53  LVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVA 86
           LV  GEAVGV+AAQSIGEPGTQ+TMRTFH  G A
Sbjct: 908 LVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAA 941



 Score = 41.6 bits (96), Expect = 1e-07
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 326  SVLARAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTG 370
            S ++ A+F+ET + L  A++ G  D+L G+ EN+IVG+ I  GTG
Sbjct: 1317 SFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTG 1361



 Score = 26.2 bits (56), Expect = 0.006
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 7/47 (14%)

Query: 89   NVTLGLPRMIEIVDARKEPSTPTM------TIYLNDEFKGNREKAAT 129
            ++T GLPR+ ++ +ARK P  P +      T+    E KG R    T
Sbjct: 1133 DITGGLPRVADLFEARK-PKEPAILAEHSGTVSFGKETKGKRRLIIT 1178