Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1317 a.a., DNA-directed RNA polymerase subunit beta'' from Synechocystis sp000284455 PCC 6803

 Score = 55.8 bits (133), Expect = 7e-12
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query: 54  VEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGV 85
           V+ GEAVG++AAQSIGEPGTQ+TMRTFH  GV
Sbjct: 307 VDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGV 338



 Score = 43.5 bits (101), Expect = 4e-08
 Identities = 57/235 (24%), Positives = 96/235 (40%), Gaps = 61/235 (25%)

Query: 195  LKIKTPSLKALRKRLPKVRAIHLKGVQNIKRVIIRKE--VDEYILYSEGSNIKEVFDIEG 252
            L+ + P    +  R P V  +     +++   ++  +  V EY L   G N   V D + 
Sbjct: 990  LEARKPKEACVLARAPGVCQVEYLEDESVDIKVVEDDGTVSEYPLLP-GQNAM-VTDGQR 1047

Query: 253  VDTTKTTT---NNIVEIQDVL----------------GIEAARNAIIYEMDATLGNQGLT 293
            +D     T   NN  EI DV                 G++AA+  ++ E+     +QG+ 
Sbjct: 1048 IDVGHALTDGYNNPHEILDVFFSYYVDKDGCYQAALRGLQAAQKFLVNEVQTVYQSQGVD 1107

Query: 294  VDKRHL-----MMVADLMCTDG------------------VVKPIGRHG----------I 320
            +  +H+      M A +   DG                  V + +G  G          +
Sbjct: 1108 ISDKHIEVIVRQMTAKVRIDDGGDTTMLPGELVELRQVEQVNEAMGITGSAPARYTPVLL 1167

Query: 321  GGEKASV-----LARAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTG 370
            G  KAS+     ++ A+F+ET + L  A++ G  D L G+ EN+I+G+ I  GTG
Sbjct: 1168 GITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTG 1222



 Score = 27.3 bits (59), Expect = 0.003
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 8/91 (8%)

Query: 15  LPPLLKRELSEKILREEISEEYLVDEIISETTRAYERTLVEPGEAVGVVAAQSIGEPGTQ 74
           L P +K E S K+L  EI+ +    +++    R Y    V PG  + +     + + G  
Sbjct: 912 LVPGVKLEESGKVL--EINGKGDNYQLVLRRARPYR---VSPGAVLHIEDGDLV-QRGDN 965

Query: 75  MTMRTFHYAGVAELNVTLGLPRMIEIVDARK 105
           + +  F  A   +  +  GLPR+ E+++ARK
Sbjct: 966 LVLLVFERAKTGD--IVQGLPRIEELLEARK 994