Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1318 a.a., DNA-directed RNA polymerase subunit beta' from Synechococcus elongatus PCC 7942

 Score = 57.0 bits (136), Expect = 3e-12
 Identities = 25/33 (75%), Positives = 30/33 (90%)

Query: 53  LVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGV 85
           +V+ GEAVG++AAQSIGEPGTQ+TMRTFH  GV
Sbjct: 315 MVDMGEAVGIIAAQSIGEPGTQLTMRTFHTGGV 347



 Score = 41.6 bits (96), Expect = 1e-07
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 6/57 (10%)

Query: 326  SVLARAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTGCIDICIDKSYEE 382
            S ++ A+F+ET + L  A++ G  D L G+ EN+I+G+ I  GTG       K+YEE
Sbjct: 1191 SFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGF------KAYEE 1241