Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Sinorhizobium meliloti 1021

 Score = 57.0 bits (136), Expect = 3e-12
 Identities = 27/35 (77%), Positives = 29/35 (82%)

Query: 52  TLVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVA 86
           T V  GEAVGV+AAQSIGEPGTQ+TMRTFH  G A
Sbjct: 903 TPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTA 937



 Score = 48.5 bits (114), Expect = 1e-09
 Identities = 53/211 (25%), Positives = 93/211 (44%), Gaps = 36/211 (17%)

Query: 179  KSKMKLKIEDHENVLNLKIKTPSLKALRKRLPKVRAIHLKGVQNIKRVIIRKEVDEYILY 238
            K+K ++ IE  E+          ++ +   +PK +  HL+    I++        +YIL 
Sbjct: 1163 KNKRRVMIEPAED---------GVEPVEYLIPKGKPFHLQDGDYIEK-------GDYILD 1206

Query: 239  SEGSNIKEVFDIEGVDTTKT-TTNNIVEIQDVLG-------IEAARNAIIYEMDATLGNQ 290
               +   ++  I+GV+   +   N I E+  + G       IE     ++ +++ T    
Sbjct: 1207 GNPAP-HDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEITDAGD 1265

Query: 291  -----GLTVDKRHLMMVADLMCTDGVVKPIGRHGIGG------EKASVLARAAFEETVKH 339
                 G  VD+  L  V D +  +G     G   + G      +  S ++ A+F+ET K 
Sbjct: 1266 STYIVGDNVDRIELEDVNDSLLAEGKKPAFGEPVLLGITKASLQTPSFISAASFQETTKV 1325

Query: 340  LYSASMRGYVDELGGVVENIIVGKPISMGTG 370
            L  A++ G  D L G+ EN+IVG+ I  GTG
Sbjct: 1326 LTEAAVAGKTDNLQGLKENVIVGRLIPAGTG 1356