Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1404 a.a., DNA-directed RNA polymerase subunit beta' (RefSeq) from Shewanella amazonensis SB2B

 Score = 58.5 bits (140), Expect = 1e-12
 Identities = 38/88 (43%), Positives = 48/88 (54%), Gaps = 13/88 (14%)

Query: 12  NSVLPP---LLKRELSEKILREEISEEYLVDEIISET-----TRAYERTL-----VEPGE 58
           + VL P   LL     +K+ +  + E  +   I  ET      + Y R L     +  GE
Sbjct: 854 DEVLAPRNTLLDEAWCDKLEQHSVDEVQVRSVITCETDFGVCAKCYGRDLARGHIINMGE 913

Query: 59  AVGVVAAQSIGEPGTQMTMRTFHYAGVA 86
           A+GVVAAQSIGEPGTQ+TMRTFH  G A
Sbjct: 914 AIGVVAAQSIGEPGTQLTMRTFHIGGAA 941



 Score = 44.3 bits (103), Expect = 2e-08
 Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 18/158 (11%)

Query: 215  IHLKGVQNIKRVIIRKEVDEYILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDVLG--I 272
            + L+G+ N+   I+ +  D Y L     N K +  I      K       + + + G  +
Sbjct: 1221 LRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQMLRKCIITQAGDSEFLEGEQV 1280

Query: 273  EAARNAIIYEMDATLGNQGLTVDKRHLMMVADLMCTDGVVKPIGRHGIGGEKASVLARAA 332
            E AR  I        G Q    ++  L +    + T+                S ++ A+
Sbjct: 1281 EVARVKIANRDLEAAGKQPAKFERELLGITKASLATE----------------SFISAAS 1324

Query: 333  FEETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTG 370
            F+ET + L  A++ G  D L G+ EN+IVG+ I  GTG
Sbjct: 1325 FQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTG 1362