Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1393 a.a., DNA-directed RNA polymerase (NCBI) from Rhodospirillum rubrum S1H

 Score = 57.8 bits (138), Expect = 2e-12
 Identities = 27/36 (75%), Positives = 30/36 (83%)

Query: 52  TLVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVAE 87
           T V  GEAVGV+AAQSIGEPGTQ+TMRTFH  G A+
Sbjct: 896 TKVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQ 931



 Score = 44.3 bits (103), Expect = 2e-08
 Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 38/146 (26%)

Query: 265  EIQDVLGIEAARNAIIYEMDATLGNQGLTVDKRHLMMVADLMC----------------- 307
            +I  V+G+EA  N +I E+      QG+ ++ +H+ +++  M                  
Sbjct: 1205 DILRVMGVEALANYLIKEIQDVYRLQGVKINDKHIEVISRQMLQKVEITEPGDTTFLVGE 1264

Query: 308  ----------TDGVVKPIGRHGI------GGEKASV-----LARAAFEETVKHLYSASMR 346
                       +  +K  GR         G  KAS+     ++ A+F+ET + L  A++ 
Sbjct: 1265 LIDRTDFQIENEKTLKENGRPANSIPVLQGITKASLQTHSFISAASFQETTRVLTEAAVS 1324

Query: 347  GYVDELGGVVENIIVGKPISMGTGCI 372
            G  D L G+ EN+IVG+ I  GTG +
Sbjct: 1325 GKSDSLMGLKENVIVGRLIPAGTGAM 1350