Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1428 a.a., DNA-directed RNA polymerase subunit beta' from Parabacteroides merdae CL09T00C40

 Score = 57.8 bits (138), Expect = 2e-12
 Identities = 29/57 (50%), Positives = 40/57 (70%), Gaps = 5/57 (8%)

Query: 53  LVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVA-----ELNVTLGLPRMIEIVDAR 104
           +V+ GE VGV+AAQSIGEPGTQ+T+RTFH  G+A     E ++T     ++EI + R
Sbjct: 907 MVQKGEVVGVIAAQSIGEPGTQLTLRTFHVGGIASNVATENSITSKYDGVLEIEELR 963



 Score = 53.5 bits (127), Expect = 4e-11
 Identities = 89/390 (22%), Positives = 150/390 (38%), Gaps = 71/390 (18%)

Query: 22   ELSEKILREEISEEYLVDEIISETTRAYERTLVEPGEAVGVVAAQSIGEPGTQMTM---- 77
            E+S KI  E + E    +    ETT   E+ ++E  +     AA  + E G  +      
Sbjct: 1033 EVSGKIEFESLVENVTYNVESDETTGLKEKIIIESKDKTKAPAAHIVDENGNYLKNYSLP 1092

Query: 78   -----------------------RTFHYAGVAELNVTLGLPRMIEIVDARKEPSTPTMTI 114
                                   R    AG    ++T GLPR+ E+ +AR  PS P +  
Sbjct: 1093 LGAHVVKDEGDMVKAGEVLVKIPRAVSKAG----DITGGLPRVTELFEARN-PSNPAVVS 1147

Query: 115  YLNDEF------KGNREKAATVAKNIESTNVESVSEDISVDLVNECITIILNNQQLESRG 168
             ++ E       +GNRE   T         V+     +S  L+ +    I     L    
Sbjct: 1148 EIDGEVGFGKIKRGNREITVTSKLG----EVKKYMVPLSKQLLVQENDYIRAGMPLSDGA 1203

Query: 169  LTVPDVI-----DAIKSKMKLKIEDHENVLNLKIKTPSLKAL-RKRLPKVRAIHLKGVQN 222
             T  D++      A++  +  +I+D   +  +KI     + + R+ + KV  I       
Sbjct: 1204 TTPSDILAIMGPTAVQEYIVNEIQDVYRLQGVKINDKHFEVIVRQMMRKVEIID----PG 1259

Query: 223  IKRVIIRKEVDEYILYSEGSNI--KEVFDIEGVDTTKTTTNNIVEIQDVLGIEAARNAII 280
              R + ++ VD+  +  E   I  K+V    G D+       IV ++ +       N+++
Sbjct: 1260 DTRFLEQQVVDKLEVMDENDRIWGKKVVTDPG-DSQTLQAGQIVTVRKLRD----ENSML 1314

Query: 281  YEMDATLGNQGLTVDKRHLMMVADLMCTDGVVKPIGRHGIGGEKASVLARAAFEETVKHL 340
               D  L      V+ R  +         G+ +         +  S ++ A+F+ET K L
Sbjct: 1315 KRRDLKL------VEVRDAVPATANQILQGITRA------ALQTNSFMSAASFQETTKVL 1362

Query: 341  YSASMRGYVDELGGVVENIIVGKPISMGTG 370
              A++ G VD L G+ EN+I G  I  GTG
Sbjct: 1363 NEAAINGKVDRLEGLKENVICGHLIPAGTG 1392