Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1413 a.a., DNA-directed RNA polymerase subunit beta' from Phaeobacter inhibens DSM 17395

 Score = 76.6 bits (187), Expect = 4e-18
 Identities = 105/456 (23%), Positives = 164/456 (35%), Gaps = 139/456 (30%)

Query: 52   TLVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVA------------ELNVTLGLPRMIE 99
            T V  GEAVG++AAQSIGEPGTQ+TMRTFH  GVA            E  +   +P+ +E
Sbjct: 904  TQVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQEGKIVFEMPQTLE 963

Query: 100  IVDARKEPSTPTMTIYLNDEFKGNR----------------------------------- 124
              +         M + + DE    R                                   
Sbjct: 964  NANGETLVVGRNMKLIIQDEHGEERASHKLGYGSKLFVKEGQSVARGDKLFEWDPYTLPI 1023

Query: 125  --EKAAT---------VAKNIESTNVESVSEDISV---------DLVNECITIILNNQQL 164
              EK  T         +A   E+     +++ I +         DL  E I +  + + +
Sbjct: 1024 IAEKPGTAKYVDLVSGIAVRDETDEATGMTQKIVIDWRAAPKGSDLKPEIILVDGDGEPV 1083

Query: 165  ES---RGLTVPDVIDAIKS-KMKLKIEDHENVLNLKIKTPSLKALRKRLPKVRAIHLKGV 220
             S     LT P  +DAI S +   +I   + V  +  +    K +   LP+V    L   
Sbjct: 1084 RSDAGNPLTYPMSVDAILSVEEGQQIMAGDVVARIPREGAKTKDITGGLPRV--AELFEA 1141

Query: 221  QNIKRVIIRKEVDEYILYSEGSNIKEVFDIEGVDTTKTTTNNIV---------------- 264
            +  K   I  E+D Y+ +      K    IE  D +      +V                
Sbjct: 1142 RRPKDHAIIAEIDGYVRFGRDYKNKRRISIEPADESMEPVEYMVPKGKHIPVQEGDFVQK 1201

Query: 265  ------------EIQDVLGIEAARNAIIYEMDATLGNQGLTVDKRHLMMVADLMCTDGVV 312
                        +I  ++G+EA  N +I E+      QG+ ++ +H+ ++   M     +
Sbjct: 1202 GDYIMDGNPAPHDILSIMGVEALANYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWEI 1261

Query: 313  KPIG-------------RHGIGGEKA-------------------------SVLARAAFE 334
               G                   EKA                         S ++ A+F+
Sbjct: 1262 SDSGDTTLLKGEHVDKQEFDTANEKALSRGKRPAQGEPILLGITKASLQTRSFISAASFQ 1321

Query: 335  ETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTG 370
            ET + L  AS++G  D+L G+ EN+IVG+ I  GTG
Sbjct: 1322 ETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTG 1357