Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1402 a.a., DNA-directed RNA polymerase, beta'' subunit, predominant form from Dechlorosoma suillum PS

 Score = 58.2 bits (139), Expect = 1e-12
 Identities = 27/35 (77%), Positives = 30/35 (85%)

Query: 52  TLVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVA 86
           +LV  GEAVGV+AAQSIGEPGTQ+TMRTFH  G A
Sbjct: 907 SLVNVGEAVGVIAAQSIGEPGTQLTMRTFHVGGAA 941



 Score = 46.2 bits (108), Expect = 6e-09
 Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 14/156 (8%)

Query: 215  IHLKGVQNIKRVIIRKEVDEYILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDVLGIEA 274
            + LKGV+ + R I  +  D Y L     N K +  I      + T     + + +   + 
Sbjct: 1222 LKLKGVEALARYITDEVQDVYRLQGVKINDKHIEVIVRQMLRRVTITEPGDTRFIKSEQV 1281

Query: 275  ARNAIIYEMDATLGNQGLTVDKRHLMMVADLMCTDGVVKPIGRHGIGGEKASVLARAAFE 334
             R  ++ E D  +    L     ++++        G+ K            S ++ A+F+
Sbjct: 1282 ERADVLDENDRVVAEGKLPASYDYMLL--------GITKA------SLSTDSFISAASFQ 1327

Query: 335  ETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTG 370
            ET + L  A++ G  DEL G+ EN+IVG+ I  GTG
Sbjct: 1328 ETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTG 1363