Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1316 a.a., DNA-directed RNA polymerase (beta from Mycobacterium tuberculosis H37Rv

 Score = 91.7 bits (226), Expect = 1e-22
 Identities = 96/330 (29%), Positives = 150/330 (45%), Gaps = 66/330 (20%)

Query: 53   LVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVAELNVTLGLPRMIEIVDAR----KEP- 107
            LV+ GEAVG+VAAQSIGEPGTQ+TMRTFH  GV E ++T GLPR+ E+ +AR    K P 
Sbjct: 988  LVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVGE-DITGGLPRVQELFEARVPRGKAPI 1046

Query: 108  STPTMTIYLNDEFKGNREKAATVAKNIESTNVESVSEDISVDLVNECITI-ILNNQQLES 166
            +  T  + L D   G R    T+         +   E++  D +++   + +  ++    
Sbjct: 1047 ADVTGRVRLED---GERFYKITIVP-------DDGGEEVVYDKISKRQRLRVFKHEDGSE 1096

Query: 167  RGLTVPDVIDAIKSKMKLKIEDHENVLNLKIKTPSLKALRKRLPKVRAIHLKGVQNIKRV 226
            R L+  D ++  +  M+   + HE              LR + P+   IHL         
Sbjct: 1097 RVLSDGDHVEVGQQLMEGSADPHE-------------VLRVQGPREVQIHL--------- 1134

Query: 227  IIRKEVDEYILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDVLGIEAARNAIIYEMDAT 286
             +R+             ++EV+  +GV         IV        +  R   I +  +T
Sbjct: 1135 -VRE-------------VQEVYRAQGVSIHDKHIEVIVR-------QMLRRVTIIDSGST 1173

Query: 287  LGNQGLTVDKRHLMMVADLMCTDGVVKPIGRHGIGG-EKASV-----LARAAFEETVKHL 340
                G  +D+         +  +G     GR  + G  KAS+     L+ A+F+ET + L
Sbjct: 1174 EFLPGSLIDRAEFEAENRRVVAEGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVL 1233

Query: 341  YSASMRGYVDELGGVVENIIVGKPISMGTG 370
              A++    D+L G+ EN+I+GK I  GTG
Sbjct: 1234 TDAAINCRSDKLNGLKENVIIGKLIPAGTG 1263