Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1405 a.a., DNA-directed RNA polymerase, beta' subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 58.5 bits (140), Expect = 1e-12
 Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 33/141 (23%)

Query: 34   EEYLVDEIISETT-----------RAYERTL-----VEPGEAVGVVAAQSIGEPGTQMTM 77
            EE+ +DE+I  +              Y R L     +  GEA+GVVAAQSIGEPGTQ+TM
Sbjct: 873  EEHSIDEVIVRSVITCDTDFGVCAACYGRDLARGHIINHGEAIGVVAAQSIGEPGTQLTM 932

Query: 78   RTFHYAGV-----AELNVTLGLPRMIEIVDARKEPSTPTMTIYLN--------DEFKGNR 124
            RTFH  G      AE NV +     +++ +A+   +T    + ++        DE    +
Sbjct: 933  RTFHIGGAASRASAENNVQVKNSGSLKLHNAKYVTNTDGKLVIVSRSSELAIIDELGREK 992

Query: 125  EK----AATVAKNIESTNVES 141
            E+      TV + +E  +VE+
Sbjct: 993  ERYKVPYGTVLEKLEEASVEA 1013



 Score = 43.9 bits (102), Expect = 3e-08
 Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 41/165 (24%)

Query: 247  VFDIEGVDTTKTTTNNIVEIQDVL---GIEAARNAIIYEMDATLGNQGLTVDKRHLMMVA 303
            VF+ E V+  +   +      D+L   GI    N I+ E+      QG+ ++ +H+ ++ 
Sbjct: 1198 VFEGEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVII 1257

Query: 304  DLMCTDGVVKPIG---------------------------------RHGIGGEKASV--- 327
              M    V+   G                                 R  +G  KAS+   
Sbjct: 1258 RQMLRKCVITAAGDSEFLEGEQVEVSRVKIANRELVEQGKVPATFERELLGITKASLATE 1317

Query: 328  --LARAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTG 370
              ++ A+F+ET + L  A++ G  D L G+ EN+IVG+ I  GTG
Sbjct: 1318 SFISAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTG 1362