Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1407 a.a., DNA-directed RNA polymerase subunit beta' from Klebsiella michiganensis M5al

 Score = 56.6 bits (135), Expect = 4e-12
 Identities = 24/34 (70%), Positives = 29/34 (85%)

Query: 53  LVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVA 86
           ++  GEA+GV+AAQSIGEPGTQ+TMRTFH  G A
Sbjct: 908 IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAA 941



 Score = 46.6 bits (109), Expect = 4e-09
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 26/162 (16%)

Query: 215  IHLKGVQNIKRVIIRKEVDEYILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDVLGIEA 274
            + L+GV  + R I+ +  D Y L     N K +                    +V+  + 
Sbjct: 1221 LRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHI--------------------EVIVRQM 1260

Query: 275  ARNAIIYEMDATLGNQGLTVDKRHLMMV-ADLMCTDGVVKPIGRHGIGGEKASV-----L 328
             R A I    ++   +G  V+   + +   DL     V     R  +G  KAS+     +
Sbjct: 1261 LRKATIESAGSSDFLEGEQVEYSRVKIANRDLEANGKVGATFARDLLGITKASLATESFI 1320

Query: 329  ARAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTG 370
            + A+F+ET + L  A++ G  DEL G+ EN+IVG+ I  GTG
Sbjct: 1321 SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362