Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1385 a.a., DNA-directed RNA polymerase, beta prime subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 57.4 bits (137), Expect = 2e-12
 Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 9/86 (10%)

Query: 10  LENSVLPPLLKRELSEKILREEISEEYLVDEIISETTRAYERTL-----VEPGEAVGVVA 64
           ++ +V   L++RE+S  ++R  ++ +   D  I   T  Y R L     V  GE VG++A
Sbjct: 859 VDENVAKVLVEREVSSVMIRSALTCQS--DRGIC--TLCYGRDLARGHIVNIGETVGIIA 914

Query: 65  AQSIGEPGTQMTMRTFHYAGVAELNV 90
           AQSIGEPGTQ+TMRTFH  G A   +
Sbjct: 915 AQSIGEPGTQLTMRTFHIGGTASREI 940



 Score = 48.1 bits (113), Expect = 2e-09
 Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 44/190 (23%)

Query: 224  KRVIIRKEVDEY--ILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDVLGIEAARNAIIY 281
            +++++  E+ E    L  +G +I  V D + V+     T    E+ D+L     +    Y
Sbjct: 1162 RKLVVTPEIGEAKEYLVPKGKHIT-VTDGDFVEAGDLLTEGHPELHDILRTRGEKYLARY 1220

Query: 282  ---EMDATLGNQGLTVDKRHL-MMVADLMCTDGVVKPIGRHGIGGEK------------- 324
               E+      QG+ +D +H+ ++V  ++    V+ P G   + GE+             
Sbjct: 1221 LTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVLDPGGTTFLVGEQVDKGEFRVENTRA 1280

Query: 325  ------------------------ASVLARAAFEETVKHLYSASMRGYVDELGGVVENII 360
                                    +S ++ A+F+ET K L  AS+RG +D L G+ EN+I
Sbjct: 1281 MGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVLTEASLRGKMDYLRGLKENVI 1340

Query: 361  VGKPISMGTG 370
            VG+ I  GTG
Sbjct: 1341 VGRLIPAGTG 1350