Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1414 a.a., DNA-directed RNA polymerase subunit beta' from Cupriavidus basilensis FW507-4G11

 Score = 58.2 bits (139), Expect = 1e-12
 Identities = 27/34 (79%), Positives = 29/34 (85%)

Query: 53  LVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVA 86
           LV  GEAVGV+AAQSIGEPGTQ+TMRTFH  G A
Sbjct: 914 LVNSGEAVGVIAAQSIGEPGTQLTMRTFHIGGAA 947



 Score = 50.1 bits (118), Expect = 4e-10
 Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 18/158 (11%)

Query: 215  IHLKGVQNIKRVIIRKEVDEYILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDVLGIEA 274
            + LKG++ +   I+ +  D Y L     N K +  I      +    ++ + + + G + 
Sbjct: 1227 LRLKGIEELAHYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQIADVGDTKFIPGEQV 1286

Query: 275  ARNAIIYEMDATL--GNQGLTVDKRHLMMVADLMCTDGVVKPIGRHGIGGEKASVLARAA 332
             R+ ++ E D  +  G +  T +   L +    + TD                S ++ A+
Sbjct: 1287 ERSELLDENDRVIAEGKRPATYENLLLGITKASLSTD----------------SFISAAS 1330

Query: 333  FEETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTG 370
            F+ET + L  A++ G  D+L G+ EN+IVG+ I  GTG
Sbjct: 1331 FQETTRVLTEAAIMGKTDDLRGLKENVIVGRLIPAGTG 1368