Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1396 a.a., DNA-directed RNA polymerase beta from Caulobacter crescentus NA1000

 Score = 57.8 bits (138), Expect = 2e-12
 Identities = 27/37 (72%), Positives = 31/37 (83%)

Query: 52  TLVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVAEL 88
           T V  GEAVGV+AAQSIGEPGTQ+TMRTFH  G A++
Sbjct: 903 TPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQV 939



 Score = 48.5 bits (114), Expect = 1e-09
 Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 38/144 (26%)

Query: 265  EIQDVLGIEAARNAIIYEMDATLGNQGLTVDKRHLMMVADLMCT---------------D 309
            +I  +LG+EA  N ++ E+      QG+ ++ +H+  +   M                 D
Sbjct: 1215 DILRILGVEALANFLVDEIQEVYRLQGVPINDKHIETIVRQMLQKVEILEPGDTGLIKGD 1274

Query: 310  GVVKP---------IGRHG---------IGGEKASV-----LARAAFEETVKHLYSASMR 346
             + KP         I R G         +G  KAS+     ++ A+F+ET + L  AS+ 
Sbjct: 1275 HLDKPEFDKEQEKAIARGGRPAVTQPVLLGITKASLQTKSFISAASFQETTRVLTEASVH 1334

Query: 347  GYVDELGGVVENIIVGKPISMGTG 370
            G  D L G+ EN+IVG+ I  GTG
Sbjct: 1335 GKTDTLEGLKENVIVGRLIPAGTG 1358