Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1412 a.a., DNA-directed RNA polymerase subunit beta' from Paraburkholderia graminis OAS925

 Score = 58.5 bits (140), Expect = 1e-12
 Identities = 38/79 (48%), Positives = 45/79 (56%), Gaps = 10/79 (12%)

Query: 18  LLKRELSEKILREEISEEYLVDEIISET-----TRAYER-----TLVEPGEAVGVVAAQS 67
           LL  +  E+I R  I E  +   +  ET        Y R     +LV  GEAVGV+AAQS
Sbjct: 868 LLDEDAVEEIERLGIDEVRVRTPLTCETRYGLCAACYGRDLGRGSLVNVGEAVGVIAAQS 927

Query: 68  IGEPGTQMTMRTFHYAGVA 86
           IGEPGTQ+TMRTFH  G A
Sbjct: 928 IGEPGTQLTMRTFHIGGAA 946



 Score = 45.4 bits (106), Expect = 1e-08
 Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 14/156 (8%)

Query: 215  IHLKGVQNIKRVIIRKEVDEYILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDVLGIEA 274
            + L+GV+ + R I+ +  D Y L     N K +  I      +    +  + + + G + 
Sbjct: 1227 LRLQGVEALSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQITDNGDTRFIPGEQV 1286

Query: 275  ARNAIIYEMDATLGNQGLTVDKRHLMMVADLMCTDGVVKPIGRHGIGGEKASVLARAAFE 334
             R+ ++ E D  +       DKR           + V+  I +  +  +  S ++ A+F+
Sbjct: 1287 ERSDMLDENDRMIAE-----DKRPATY-------ENVLLGITKASLSTD--SFISAASFQ 1332

Query: 335  ETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTG 370
            ET + L  A++ G  D+L G+ EN+IVG+ I  GTG
Sbjct: 1333 ETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTG 1368