Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1427 a.a., DNA-directed RNA polymerase beta' chain (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 56.6 bits (135), Expect = 4e-12
 Identities = 25/34 (73%), Positives = 30/34 (88%)

Query: 53  LVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVA 86
           +V+ GEAVGV+AAQSIGEPGTQ+T+RTFH  G A
Sbjct: 909 MVQKGEAVGVIAAQSIGEPGTQLTLRTFHAGGTA 942



 Score = 49.7 bits (117), Expect = 5e-10
 Identities = 70/299 (23%), Positives = 124/299 (41%), Gaps = 46/299 (15%)

Query: 89   NVTLGLPRMIEIVDARKEPSTPTMTIYLNDEF------KGNREKAATVAKNIESTNVESV 142
            ++T GLPR+ E+ +AR  PS P +   ++ E       +GNRE   T         + ++
Sbjct: 1126 DITGGLPRVTELFEARN-PSNPAVVSEIDGEVTMGKIKRGNREIIVTSKTGEVKKYLVAL 1184

Query: 143  SEDISV---DLVNECITIILNNQQLESRGLTVPDVIDAIKSKMKLK------IEDHENVL 193
            S+ I V   D V     +        S G T P  I AIK    ++      ++D   + 
Sbjct: 1185 SKQILVQENDYVRAGTPL--------SDGATTPADILAIKGPTAVQEYIVNEVQDVYRLQ 1236

Query: 194  NLKIKTPSLKALRKRLPKVRAIHLKGVQNIKRVIIRKEVDEYILYSEGSNI--KEVFDIE 251
             +KI     + + +++ +   I   G     R + ++ VD+     E   I  K+V  ++
Sbjct: 1237 GVKINDKHFEIIVRQMMRKVQIDEPGDT---RFLEQQVVDKLEFMEENDRIWGKKVV-VD 1292

Query: 252  GVDTTKTTTNNIVEIQDVLGIEAARNAIIYEMDATLGNQGLTVDKRHLMMVADLMCTDGV 311
              D+       IV  + +       N+++   D         V+ R  +         G+
Sbjct: 1293 AGDSQNMQPGQIVTARKLRD----ENSMLKRRDLK------PVEVRDAVAATSTQILQGI 1342

Query: 312  VKPIGRHGIGGEKASVLARAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTG 370
             +         + +S ++ A+F+ET K L  A++ G  D+L G+ EN+I G  I  GTG
Sbjct: 1343 TRA------ALQTSSFMSAASFQETTKVLNEAAINGKTDKLEGMKENVICGHLIPAGTG 1395