Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1405 a.a., DNA-directed RNA polymerase subunit beta' (RefSeq) from Shewanella sp. ANA-3

 Score = 57.4 bits (137), Expect = 3e-12
 Identities = 26/34 (76%), Positives = 29/34 (85%)

Query: 53  LVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVA 86
           L+  GEA+GVVAAQSIGEPGTQ+TMRTFH  G A
Sbjct: 908 LINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAA 941



 Score = 44.3 bits (103), Expect = 2e-08
 Identities = 65/288 (22%), Positives = 118/288 (40%), Gaps = 64/288 (22%)

Query: 89   NVTLGLPRMIEIVDARKEPSTPTM------TIYLNDEFKGNREKAATVAKNIESTNVESV 142
            ++T GLPR+ ++ +ARK P  P +      TI    E KG R    T A   E       
Sbjct: 1133 DITGGLPRVADLFEARK-PKEPAILAEISGTISFGKETKGKRRLVITPADGGEQYE---- 1187

Query: 143  SEDISVDLVNECITIILNNQQLESRGLTVPDVIDAIKSKMKLKIEDHENVLNLKIKTPSL 202
                  +++ +   + +   +   RG  + D  +A    ++L+     NV N  +     
Sbjct: 1188 ------EMIPKWRNLNVFEGEKVERGEVIADGPEAAHDILRLR--GIHNVANYIVNEVQ- 1238

Query: 203  KALRKRLPKVRAIHLKGVQNIKRVIIRKEVDEYILYSEGSNIKEVFDIEGVDTTKTTTNN 262
               R +  K+   H++       VIIR+ + + ++ S G +  E  + E V+ ++     
Sbjct: 1239 DVYRLQGVKINDKHIE-------VIIRQMLRKCVITSAGDS--EFLEGEQVEVSR----- 1284

Query: 263  IVEIQDVLGIEAARNAIIYEMDATLGNQGLTVDKRHLMMVADLMCTDGVVKPIGRHGIGG 322
                     ++ A   +I +     G    T ++  L +    + T+             
Sbjct: 1285 ---------VKIANRDLIEQ-----GKVPATFERELLGITKASLATE------------- 1317

Query: 323  EKASVLARAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTG 370
               S ++ A+F+ET + L  A++ G  D L G+ EN+IVG+ I  GTG
Sbjct: 1318 ---SFISAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTG 1362