Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1399 a.a., DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6) from Pseudomonas fluorescens FW300-N2E2

 Score =  228 bits (580), Expect = 3e-63
 Identities = 227/911 (24%), Positives = 382/911 (41%), Gaps = 144/911 (15%)

Query: 8   KEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL-GVIDP------- 58
           +E   I  GL SPE IR+ S  ++   +T +   + P   GL   ++ G +         
Sbjct: 15  EEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECLCGK 74

Query: 59  -------GLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGKV 108
                  G++C+ C   V           HIEL+ PV HI F K +   +  +      +
Sbjct: 75  YKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSLPSRIGLLMD----M 130

Query: 109 TITEIKRDEYLEKMAKLEEDGGDPWTLCDDLLKEAAKGSVCPSCGEVKADVKYDKPTA-- 166
           T+ +I+R  Y E    +  D G        LL +          G+   D +        
Sbjct: 131 TLRDIERVLYFESYVVI--DPGMTTLEKGQLLNDEQYFEALEEFGD-DFDARMGAEAVRE 187

Query: 167 -YHQLD-----GKAQKQLTSSEVREILEKIPAEDCKLLGINAKVARPEFMVLTVLPVPPV 220
             H +D     G+ ++++  +     ++K+      +         PE+MVLTVLPV P 
Sbjct: 188 LLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLTVLPVLPP 247

Query: 221 TVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYF 280
            +RP + L+ G  +  DL      +I  N RL+  ++  AP++I+ +   +LQ  ++   
Sbjct: 248 DLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQEAVDALL 307

Query: 281 DNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINEV 340
           DN   G       + RPL++LA  +KGK+GRFR NL GKRV++S R+VI+  P L +++ 
Sbjct: 308 DNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPTLRLHQC 366

Query: 341 GIPKLIAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVRTKDGKEEEYKIKIT 400
           G+PK +A EL  P       +  +   ++             KK+  ++  E      + 
Sbjct: 367 GLPKKMALELFKPFIFGKLEMRGLATTIK-----------AAKKMVERELPE------VW 409

Query: 401 DANKDMWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCVC 460
           D   +          VI  H      VL NR P+LHR+ I A +  ++  +  + +  VC
Sbjct: 410 DVLAE----------VIREH-----PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC 454

Query: 461 PPYNADFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPIIGAIHDFISGAYVLT 520
             YNADFDGD+M VHVP + EA+ EA  LM+   +I+SP  G PII    D + G Y +T
Sbjct: 455 AAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT 514

Query: 521 SSLFTKDEALTLLKSSGLNVELGEPDVIENNIEYYSGKSLFSKTLPEGLSLQYRAKICKK 580
                  EA+       +  +L E D +     + +G++         L  + + +I + 
Sbjct: 515 R------EAINAKGEGRVFADLQEVDRV-----FRAGEA--------ALHAKVKVRINET 555

Query: 581 CDTCTKEECEHDAYVVIRNGKLLRGVIDKNGFGSEA----------GIVLNTLVKDFGSE 630
            +        +   V    G+ L   +   G   +             ++N   +  G +
Sbjct: 556 VNDRDGGSVTNTRIVDTTVGRALLFQVVPKGLSFDVVNLPMKKKAISKLINQCYRVVGLK 615

Query: 631 DARLFLDAATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLLNKAEQDVEDIVEKYENG 690
           +  +F D           + G + G++D  IP E  +    ++  A ++V++I  +Y +G
Sbjct: 616 ETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKAR----IIGAATEEVKEIESQYASG 671

Query: 691 TLESLPGRGVEESREAYIMQILGKARDQAGNVAEKYLSKE---------------NHAAL 735
            +        +  +   ++ +  KA D+        LSKE               N   +
Sbjct: 672 LV-------TQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGNEVDQESFNSMYM 724

Query: 736 MARTGARGSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFGKGSLDAKSHGFVRSCYK 795
           MA +GARGS   I  +A   G  +   G +                        + + ++
Sbjct: 725 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETP--------------------ITANFR 764

Query: 796 KGLAPTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQD-IRAEYDGTVRDSRGLVV 854
           +GL+  +YF    G R+GL D A++TA SGY+ RRLV+  QD +  E D        +  
Sbjct: 765 EGLSVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLVMTP 824

Query: 855 QFEYGEDLVDP 865
             E G D+V+P
Sbjct: 825 HIE-GGDVVEP 834