Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

 Score =  246 bits (627), Expect = 9e-69
 Identities = 237/894 (26%), Positives = 386/894 (43%), Gaps = 164/894 (18%)

Query: 8   KEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL-GVIDP------- 58
           +E   I  GL SP+ IR+ S  ++   +T +   + P   GL   R+ G +         
Sbjct: 15  EEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74

Query: 59  -------GLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAK---------------D 93
                  G++C+ C   V          GHIEL+ PV HI F K               D
Sbjct: 75  YKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSLPSRIGLLMDMPLRD 134

Query: 94  IYKILKAVCPHCGKVTITEIKRDEYLEKMAKLE--EDGGDPWTLCDDLLKEAAKGSVCPS 151
           I ++L        +  +T+++R + L +   L+  E+ GD +T    +  EA K  +   
Sbjct: 135 IERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDEFTA--KMGAEAIKDLLA-- 190

Query: 152 CGEVKADVKYDKPTAYHQLDGKAQKQLTSSEVREILEKIPAEDCKLLGINAKVARPEFMV 211
                     D P    Q+  +     + ++ +++ +++   +  +   N    +PE+M+
Sbjct: 191 --------SMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGN----KPEWMI 238

Query: 212 LTVLPVPPVTVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDL 271
           LTVLPV P  +RP + L+ G  +  DL      +I  N RL+  +   AP++I+ +   +
Sbjct: 239 LTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRM 298

Query: 272 LQYHINTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISP 331
           LQ  ++   DN   G       + RPL++LA  +KGK+GRFR NL GKRV++S R+VI+ 
Sbjct: 299 LQESVDALLDNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITV 357

Query: 332 DPRLSINEVGIPKLIAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVRTKDGK 391
            P L +++ G+PK +A EL       P+   K+            G+   +K  +    +
Sbjct: 358 GPYLRLHQCGLPKKMALEL-----FKPFIYSKLETR---------GLATTIKAAKKMVER 403

Query: 392 EEEYKIKITDANKDMWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVKVLPYR 451
           EE     I D              VI  H      VL NR P+LHR+ I A +  ++  +
Sbjct: 404 EEAVVWDILDE-------------VIREHP-----VLLNRAPTLHRLGIQAFEPVLIEGK 445

Query: 452 TFRHNLCVCPPYNADFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPIIGAIHD 511
             + +  VC  YNADFDGD+M VHVP + EA+ EA  LM+   +I+SP  G PII    D
Sbjct: 446 AIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARTLMMSTNNILSPASGDPIIVPSQD 505

Query: 512 FISGAYVLT-SSLFTKDEALTL-----------LKSSGLNVELGEPDVIENNIEYYSGKS 559
            + G Y +T   +  K E + L            K++ L+  +     I   I++ +GK 
Sbjct: 506 VVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTKTAELHARVKVR--ITETIKHENGK- 562

Query: 560 LFSKTLPEGLSLQYRAKICKKCDTCTKEECEHDAYVVIRNGKLLRGVIDKNGFGSEAGIV 619
           L ++T              K  DT          + ++  G L   ++++     +   +
Sbjct: 563 LTTET--------------KMIDTTVGRAM---LWQIVPKG-LPYSLVNQKLGKKQISNL 604

Query: 620 LNTLVKDFGSEDARLFLDAATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLLNKAEQD 679
           LN   +  G +D  +F D           L G + GIDD  +PA    EI +    AE++
Sbjct: 605 LNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAE----AEEE 660

Query: 680 VEDIVEKYENGTLESLPGRGVEESREAYIMQILGKARDQAGNVAEKYLSKE--------- 730
           V +I E++++G + +         R   ++ I     D+      + LS E         
Sbjct: 661 VREIQEQFQSGLVTA-------GERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQ 713

Query: 731 ------NHAALMARTGARGSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFGKGSLDA 784
                 N   +MA +GARGS   I  +A   G  +   G +                   
Sbjct: 714 EKQESFNSIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETP--------------- 758

Query: 785 KSHGFVRSCYKKGLAPTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQDI 838
                + + +K+GL   +YF    G R+GL D A++TA SGY+ RRLV+  QD+
Sbjct: 759 -----ITANFKEGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDV 807