Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1318 a.a., DNA-directed RNA polymerase subunit beta' from Synechococcus elongatus PCC 7942

 Score = 71.6 bits (174), Expect = 3e-16
 Identities = 57/232 (24%), Positives = 100/232 (43%), Gaps = 35/232 (15%)

Query: 627 FGSEDARLFLDAATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLLNKAEQDVEDIVEK 686
           +G+    +  D    +  +     G +  IDD  +P    +    LL  AE+ +++  ++
Sbjct: 31  YGTAKTAVVADDLKALGFRYATRAGVSISIDDLKVPGSKAE----LLESAEKRIQETEDR 86

Query: 687 YENGTLESLPGRGVEESREAYIMQILGKARDQAGNVAEKYLSKE---NHAALMARTGARG 743
           Y  G +        E  R   ++       D+  +   K   +    N   +MA +GARG
Sbjct: 87  YTRGEI-------TEVERFQKVIDTWANTNDELTDRVVKNFRESDPLNSVYMMAFSGARG 139

Query: 744 SLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFGKGSLDAKSHGFVRSCYKKGLAPTEY 803
           ++  +  +    G  +   G +        LP              +++ +++GL  TEY
Sbjct: 140 NISQVRQLVGMRGLMANPQGEII------DLP--------------IKTNFREGLTVTEY 179

Query: 804 FFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQDIRAEYDGTVRDSRGLVVQ 855
              + G R+GLVD A+RTA SGY+ RRLV+  QD+   ++     SRGL V+
Sbjct: 180 IISSYGARKGLVDTALRTADSGYLTRRLVDVSQDV-IIHEVDCGTSRGLFVE 230