Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 624 a.a., DNA-directed RNA polymerase subunit gamma from Synechococcus elongatus PCC 7942

 Score =  170 bits (430), Expect = 3e-46
 Identities = 111/317 (35%), Positives = 171/317 (53%), Gaps = 33/317 (10%)

Query: 205 ARPEFMVLTVLPVPPVTVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLI 264
           +RPE+MVL V+PV P  +RP + L+ G  +  DL      +I  N RL       AP +I
Sbjct: 238 SRPEWMVLNVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEII 297

Query: 265 IEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFS 324
           + +   +LQ  ++   DN   G       + RPL++L+  ++GK+GRFR NL GKRV++S
Sbjct: 298 VRNEKRMLQEAVDALIDNGRRGRTVVG-ANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYS 356

Query: 325 ARTVISPDPRLSINEVGIPKLIAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKK 384
            R+VI   P L I++ G+P+ +A EL  P  +          L++N S N+      +K+
Sbjct: 357 GRSVIVVGPNLKIHQCGLPREMAIELFQPFVI--------HRLIKNHSINN------IKQ 402

Query: 385 VRTKDGKEEEYKIKITDANKDMWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHK 444
            +           K+   N D  + ++ + ++      +G  V+ NR P+LHR+ I A +
Sbjct: 403 AK-----------KLIQKN-DPLIWDVLEEVI------EGHPVMLNRAPTLHRLGIQAFE 444

Query: 445 VKVLPYRTFRHNLCVCPPYNADFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGP 504
             ++  R  + +  VCP +NADFDGD+M VHVP S EA+AEA  LML   +I+SP  G P
Sbjct: 445 PILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLSIEAQAEARMLMLASGNILSPATGQP 504

Query: 505 IIGAIHDFISGAYVLTS 521
           I+    D + G Y LT+
Sbjct: 505 IVTPSQDMVLGCYYLTA 521