Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Sinorhizobium meliloti 1021

 Score =  228 bits (581), Expect = 2e-63
 Identities = 240/885 (27%), Positives = 377/885 (42%), Gaps = 148/885 (16%)

Query: 6   VPKEIGD-ITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL-GVIDP---- 58
           VP +  D I   + SPE+I + S  +I   +T +   + P   GL   R+ G I      
Sbjct: 13  VPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECL 72

Query: 59  ----------GLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAKDIYKILKAVCPHC 105
                     G++C+ C   V          GHIEL+ PV HI F K +   +  +    
Sbjct: 73  CGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKSLPSRIATLLD-- 130

Query: 106 GKVTITEIKRDEYLEKMAKLEEDGGDPWTLCDDLLKEAAKGSVCPSCGEVKADVKYDKPT 165
             +T+ +I+R  Y E     E   G      + LL E          GE +         
Sbjct: 131 --MTLKDIERVLYFENYIVTEP--GLTSLKENQLLSEEEYMIAVDEFGEDQFTAMIGAEA 186

Query: 166 AYHQLDGKAQKQLTSSEVREILEKIPAEDCKLLGINAKVA--------RPEFMVLTVLPV 217
            Y  L     +++      E+ E       K L    K+         RPE+M++ V+PV
Sbjct: 187 IYEMLASMNLEKIAGDLRSEMAETTSDLKQKKLMKRLKIVENFMESGNRPEWMIMKVVPV 246

Query: 218 PPVTVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHIN 277
            P  +RP + L+ G  +  DL      +I  N RL+  I   AP +II +   +LQ  ++
Sbjct: 247 IPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRMLQESVD 306

Query: 278 TYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSI 337
             FDN   G       + RPL++L+  LKGK+GRFR NL GKRV++S R+VI   P L +
Sbjct: 307 ALFDNGRRG-RVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGPELKL 365

Query: 338 NEVGIPKLIAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVRTKDGKEEEYKI 397
           ++ G+PK +A EL       P+   ++ A          G +  VK+ +    KE+    
Sbjct: 366 HQCGLPKKMALEL-----FKPFIYARLDA---------KGYSSTVKQAKKLVEKEKP--- 408

Query: 398 KITDANKDMWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNL 457
                  ++W  +I D ++ E        VL NR P+LHR+ I A +  ++  +  + + 
Sbjct: 409 -------EVW--DILDEVIREHP------VLLNRAPTLHRLGIQAFEPILVEGKAIQLHP 453

Query: 458 CVCPPYNADFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPIIGAIHDFISGAY 517
            VC  +NADFDGD+M VHVP S EA+ EA  LM+   +I+ P  G PII    D + G Y
Sbjct: 454 LVCTAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNILHPANGAPIIVPSQDMVLGLY 513

Query: 518 VLT--------------------SSLFTKDEALTLLKSSGLNVELGEPDVIENNIEYYSG 557
            L+                     +L TK   L             E + +    E   G
Sbjct: 514 YLSIMNQNEPGEGMAFSDMGELHHALETKAVTLHAKIRGRYKTVDAEGNPVSKIYETTPG 573

Query: 558 KSLFSKTLPEGLSLQYRAKICKKCDTCTKEECEHDAYVVIRNGKLLRGVIDKNGFGSEAG 617
           + +  + LP+  ++ +        +TC +E              + +  I K        
Sbjct: 574 RMIIGELLPKNPNVPF--------ETCNQE--------------MTKKNISK-------- 603

Query: 618 IVLNTLVKDFGSEDARLFLDAATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLLNKAE 677
            +++T+ +  G +D  +F D   ++        G + G DD  IP        D   K  
Sbjct: 604 -MIDTVYRHCGQKDTVIFCDRIMQLGFSHACRAGISFGKDDMVIP--------DTKVKIV 654

Query: 678 QDVEDIVEKYENGTLESLPGRGVEESREAYIMQILGKARDQAGNVAEKYLSKENHAALMA 737
            D E +V++YE    + L  +G + ++   ++   GKA ++   VAE+ +++   A    
Sbjct: 655 GDTEALVKEYEQQYNDGLITQGEKYNK---VVDAWGKATEK---VAEEMMARIK-AVEFD 707

Query: 738 RTGARGSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFGKGSLDAKSHGF-----VRS 792
            +G +  + +I MM+ S  + S    R   G R           L AK  G      + S
Sbjct: 708 DSGRQKPMNSIYMMSHSGARGSPNQMRQLGGMR----------GLMAKPSGEIIETPIIS 757

Query: 793 CYKKGLAPTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQD 837
            +K+GL   EYF    G R+GL D A++TA SGY+ RRLV+  QD
Sbjct: 758 NFKEGLTVNEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQD 802